Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1995 ATGACAGGGTTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAATGCACGAGTGATTGTGTATTTGCTCCTTACTTTTCCTACGACCAAGCTTCAACCCATTTTGCAGCAGTGCATAAGATTTATGGAGCTAGTAACGTCTCCAAGCTATTGTCACATCTTCCAATCCAGAATAGAAGCGATGCTGCCACCACCATATCTTATGAAGCCTTGGCTCGCGTGCATGATCCTATTTATGGCTGTGTTGCTCATATCTATGCATTGCAGCAACAGGTTGTGAACTTGCAAGAGGAGATAGATGCTCTTGGAAGCATAGTGGCAAATTCCACAGTTAGTGTTGTGAATTCTGGCACTGTCGAAGCACCAATGTACTCAGACAACGGAATACCTTATAATATTTTGCAGCATGATGCTACAAGGACACAGTATTTTCAAAATAATCTGGCTAACTTTCTTTCACAAGATGGAAGTGCCACAGTCTGCCAAAGTTTGGACTCACAGATGAATATAGAGCTTCCTAATGCACACGTGGAAGAACCTTCCTTTGGTGATTCCAACTCCAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTCTTCGTGAATCATCCATGGTTCAAGCATAATGCAGACATAAAGGGCTCGGAATATTGA 666 0.4279 MTGFGSSCGACKFLRRKCTSDCVFAPYFSYDQASTHFAAVHKIYGASNVSKLLSHLPIQNRSDAATTISYEALARVHDPIYGCVAHIYALQQQVVNLQEEIDALGSIVANSTVSVVNSGTVEAPMYSDNGIPYNILQHDATRTQYFQNNLANFLSQDGSATVCQSLDSQMNIELPNAHVEEPSFGDSNSNPLEQFLSGIDQEVFVNHPWFKHNADIKGSEY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1995 221 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Pvu8g1995 221 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 216 - -
Pvu8g1995 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 216 - -
Pvu8g1995 221 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1995 Pvu-Chr8 49887811 49888939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1995 1 152 AS2 family AT5G06080 57.895 4.29e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu8g1995 LOB 6.9e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1995 8 49887811 49888939 Pvu8g1995 8 49887811 49888939 ECH