Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1992 ATGGCTTCAAGCTCCCACAACAATAAGGAAAACTCTTCTTCTTGGACTCGCATGCAGAACAAGCAATTCGAAAGCGCACTTGCCTTGTATGATCAAGACACCCCAGATCGATGGCAGAACATAGCCAGAATAGTTGGTGATAAATCTGCTGAGGAAGTCAAGAAACACTACGAAATCCTTCTGGAAGACCTTAGGCATATAGAGTCTGGACGTGTTCCAATCCCCACCTACAAGTCCACTCATGATCGTAACAATGAAGAGAGGTCTCTCAAGTATCTTAATCAGCAGTGA 291 0.4433 MASSSHNNKENSSSWTRMQNKQFESALALYDQDTPDRWQNIARIVGDKSAEEVKKHYEILLEDLRHIESGRVPIPTYKSTHDRNNEERSLKYLNQQ* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1992 96 ProSiteProfiles Myb-like domain profile. 7 61 IPR001005 -
Pvu8g1992 96 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 80 IPR044636 GO:0003700
Pvu8g1992 96 SMART sant 11 63 IPR001005 -
Pvu8g1992 96 MobiDBLite consensus disorder prediction 74 96 - -
Pvu8g1992 96 CDD SANT 14 61 IPR001005 -
Pvu8g1992 96 PANTHER PROTEIN RADIALIS-LIKE 3 1 80 - -
Pvu8g1992 96 Gene3D - 6 74 - -
Pvu8g1992 96 SUPERFAMILY Homeodomain-like 14 67 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1992 Pvu-Chr8 49858342 49860229 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu8g1992 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1992 - - pvu:PHAVU_008G192200g 195.667