Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1989 ATGTCTTCACATTGGTGTTTCCGGTGCAACAAATTTGTCAGAGTAAGGAGACAGGAAATGCCGATGTGTCCAGATTGTGACAGTGGATTCGTTGAAGAGGTCGACTCGTCCAGCCGCCCTGTCCATGTCGAAACGCGCCGCCGTAGGTTCCCCACGGCGGCTGCCATGTACATGATCGGCCACCGTTCTGGTAACTCTGACCGCATTCCCCGCTCCTCTCGCCATCATCATTGCAGAACCGTCGTCGGTGACCCGTCTCCGCTCAACCCGGTCATCATGCTCCGCGGAGAGGGGTCAAGCCACGAACGTAGCTCTAGCTTCGACCTTTTCTACGACGACGGCGCCGGTACCGGTCTCCGACCACTCCCTCCGAGGATGTCGGAGTTTCTCCTCGGAACAGGCTTCGAGCGTGTGATGGACCAACTTTCCGACGTGGAGTCTAACTCCGGGTCTGGGAGGCACGACCAGCACCACGCGCCGGCGTCTAAAGCTGCCGTGGAGGCCTTGCCGTCGGTTGAGATAAACGCGTCCCACATGGTGACTGAGTCACACTGCGCGGTCTGCAAAGAGCCTTTTGAGCTTTGCACCGTAGCGACAGAAATGCCATGCAAACACTTATACCATCCAGAATGCATCTTACCGTGGCTTGCGATTCGGAACTCATGCCCCGTGTGCCGCAAAGAGTTGCCTGTTGAGAACGCACGCGCGGGGTTGGAGCGTGTGGAGGAGGGGGAAGAGAACAACGTGGGGTTGACGATTTGGCGGTTACCGGGTGGAGGGTTTGCGGTGGGAAGGTTGGGGAGAAGAGAGGGCGAGAGAGAGGTTAATGTTCCTCTTGTGTACACGGAAGTGGATGGTGGGTTAAACTTTAACAACTTTGTTATGGGTGAACCCAGAAGGATTTCATGGTCGGTTTCGGAGTCTCGAGGGAGGAGAAGAGGTGGCGCGTTTAGAAGAATGTTTAACGGTTTGTTTGGTTGCTTGAGAGGTGGTGGGGTAGGGCCTCAACGTTCTTCCAGTTCTGGTTCTTCGAGAACCGCGATGAGTACCACCAGTGTTAGGGCTTCGCGTCCTAACATTGGTCCTTCTTTATCTTCGCGTAGAACTTGGTCAATGGATGTCAATGGTGGAACCAGACCATGGTAA 1146 0.5532 MSSHWCFRCNKFVRVRRQEMPMCPDCDSGFVEEVDSSSRPVHVETRRRRFPTAAAMYMIGHRSGNSDRIPRSSRHHHCRTVVGDPSPLNPVIMLRGEGSSHERSSSFDLFYDDGAGTGLRPLPPRMSEFLLGTGFERVMDQLSDVESNSGSGRHDQHHAPASKAAVEALPSVEINASHMVTESHCAVCKEPFELCTVATEMPCKHLYHPECILPWLAIRNSCPVCRKELPVENARAGLERVEEGEENNVGLTIWRLPGGGFAVGRLGRREGEREVNVPLVYTEVDGGLNFNNFVMGEPRRISWSVSESRGRRRGGAFRRMFNGLFGCLRGGGVGPQRSSSSGSSRTAMSTTSVRASRPNIGPSLSSRRTWSMDVNGGTRPW* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1989 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 326 - -
Pvu8g1989 381 SMART ring_2 185 225 IPR001841 -
Pvu8g1989 381 Pfam Protein of unknown function (DUF1117) 249 353 IPR010543 -
Pvu8g1989 381 MobiDBLite consensus disorder prediction 334 373 - -
Pvu8g1989 381 MobiDBLite consensus disorder prediction 332 381 - -
Pvu8g1989 381 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Pvu8g1989 381 Pfam zinc-ribbon 3 33 IPR039525 GO:0061630
Pvu8g1989 381 Pfam Ring finger domain 184 226 IPR001841 -
Pvu8g1989 381 SUPERFAMILY RING/U-box 165 231 - -
Pvu8g1989 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Pvu8g1989 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1989 Pvu-Chr8 49822431 49823576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1989 121 247 C3H Transcription Factor Family AT5G01980 40.157 1.97e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1989 - K11982 gmx:100789228 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1989 8 49822431 49823576 Pvu6g0203 6 9444274 9446838 PCT