Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1975 ATGGAGTTTCCGAACGAAGCAATATCAGAAGGGTGTTCTCAGAAGAAAAGTGGAAGAGGGAAAATAGAGATCAAGCGGATCGAGAACACCACCAACCGGCAAGTTACCTTCTGCAAACGTCGCAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTTTATGAGTATGCCAACAACAGTGTTAGAGGAACTATCGATAGGTACAAGAAAGCATCTGCTGCTTCCTCAAATGCAGAATCTGTGTCTGAAGCTAATACACAG 312 0.4519 MEFPNEAISEGCSQKKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKASAASSNAESVSEANTQ 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1975 104 Gene3D - 29 104 IPR036879 GO:0003677|GO:0046983
Pvu8g1975 104 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 13 99 - -
Pvu8g1975 104 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Pvu8g1975 104 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Pvu8g1975 104 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Pvu8g1975 104 PANTHER MADS BOX PROTEIN 13 99 - -
Pvu8g1975 104 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Pvu8g1975 104 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pvu8g1975 104 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Pvu8g1975 104 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Pvu8g1975 104 SUPERFAMILY SRF-like 18 92 IPR036879 GO:0003677|GO:0046983
Pvu8g1975 104 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1975 Pvu-Chr8 49611850 49614871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1975 13 104 MADS-box Gene Family AT3G58780 85.870 1.65e-52 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu8g1975 SRF-TF 3.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1975 K09264 - gmx:100792224 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu6g0362 6 13962324 13963173 Pvu8g1975 8 49611850 49614871 PCT