Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1971 ATGCATTCACACAACAACACAATTCCATTTTCTCTCTATTCCAAAACCCTCACCCCCGCAATGGAAACCGAGAAGCTTCAGCTTCGCTTCTCGGTCGGCCGGCAATCCTCCCTCGCGCCGGAGCGCGGCGGTGCGGAGGACGTGGCGGAGGCGCTGGATCCGACGGTTCGGTTGATGTATCTGGCCAACGAAGGAGACTTGGTCGGGATTGAGGAACTGTTGGACTCGGGGAGCGACGTCAGTTTCACCGACATTGACGGCCGCACTGCGCTCCACGTCGCCGCCTGCCAGGGCCGCACCGACGTTGTTGACCTGCTGGTACGACGAGGGGCCGACGTTGATCCGCGAGACCGCTGGGGCAGCACCCCTCTAGCTGATGCAATGTACTACAAAAACCACGACATCGTGAAGCTTTTGGAGAAACACGGTGCAAAACCTCCTATAACTCCCATGCATGTGGAGAATGCTCGAGAAGTCCCAGAGTATGAGATTGATCCTTCTGAACTTGATTTTACTAATAGTTTTTGCATAACAAAGGGAACTTTCCGGATTGCATTATGGCGTGGAACTCAGGTTGCAGTCAAGACACTTGGAGAGGAAGTGTTCACCGATGATGATAAAGTAAAGGCATTTCTTGATGAGCTTACATTACTTGAGAAAATAAGGCATCCAAATGTAGTTCAGTTTTTGGGTGCTGTAACCCAAAGTACCCCAATGATGATCGTCACAGAATATCTACCCCAGGGGGATCTTCATGCCTACATTAATCGGAAAGGTGCATTAAAACCAGCAACAGCTGTAAAATTTGCACTTGATATTGCTAGGGGTATGAACTATTTGCACGAACATAAACCAGAAGCCATTATACACCGAGATCTTGAGCCTTCAAATATTTTGCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTTAAAGTTACTAAAACAGTCAAAGAAGACAAACCTGTGACAAGCCTCGATACATCATGGCGATATGTTGCACCAGAAGTCTATAGAAATGAGGAATACGACACAAAAGTGGATGTGTTTTCTTTTGCTCTGATATTACAGGAGATGATTGAAGGTTGTCCACCGTTCTATGCAAAGCCAGAAAATGAAGTTCCTAAAGCTTATGTTGAAAATGAGCGGCCACCATTTAGAGCATTGCCAAAACTTTATGCTCATGGACTAAAACAGTTAATTGAGGAATGCTGGGATGAAAAACCACACAGAAGACCAACATTTAGGCAAATAATTGAGAGTTTGGATGAAATCAACAGCCATCTTATTCAAAAGAGGCGCTGGAAGATTGGAGCTCCTGGATGCATCCAGTACCTGGAGGCCCTATTTAGGGGTAATCGCACAAGTCCAAGTAGCCGGTCATCTCGCTCCACAGCCAGATAA 1422 0.4691 MHSHNNTIPFSLYSKTLTPAMETEKLQLRFSVGRQSSLAPERGGAEDVAEALDPTVRLMYLANEGDLVGIEELLDSGSDVSFTDIDGRTALHVAACQGRTDVVDLLVRRGADVDPRDRWGSTPLADAMYYKNHDIVKLLEKHGAKPPITPMHVENAREVPEYEIDPSELDFTNSFCITKGTFRIALWRGTQVAVKTLGEEVFTDDDKVKAFLDELTLLEKIRHPNVVQFLGAVTQSTPMMIVTEYLPQGDLHAYINRKGALKPATAVKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVTKTVKEDKPVTSLDTSWRYVAPEVYRNEEYDTKVDVFSFALILQEMIEGCPPFYAKPENEVPKAYVENERPPFRALPKLYAHGLKQLIEECWDEKPHRRPTFRQIIESLDEINSHLIQKRRWKIGAPGCIQYLEALFRGNRTSPSSRSSRSTAR* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1971 473 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 30 455 - -
Pvu8g1971 473 SMART ANK_2a 119 148 IPR002110 GO:0005515
Pvu8g1971 473 SMART ANK_2a 86 115 IPR002110 GO:0005515
Pvu8g1971 473 SMART ANK_2a 52 82 IPR002110 GO:0005515
Pvu8g1971 473 Gene3D Phosphorylase Kinase; domain 1 176 246 - -
Pvu8g1971 473 Gene3D - 41 175 IPR036770 -
Pvu8g1971 473 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 455 - -
Pvu8g1971 473 Pfam Ankyrin repeats (3 copies) 58 146 IPR002110 GO:0005515
Pvu8g1971 473 Pfam Protein tyrosine and serine/threonine kinase 189 428 IPR001245 GO:0004672|GO:0006468
Pvu8g1971 473 PIRSF ILK 9 448 - -
Pvu8g1971 473 SUPERFAMILY Protein kinase-like (PK-like) 176 428 IPR011009 -
Pvu8g1971 473 Gene3D Transferase(Phosphotransferase) domain 1 247 445 - -
Pvu8g1971 473 ProSiteProfiles Protein kinase domain profile. 164 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g1971 473 CDD STKc_MAP3K-like 185 428 - -
Pvu8g1971 473 SUPERFAMILY Ankyrin repeat 57 149 IPR036770 -
Pvu8g1971 473 ProSiteProfiles Ankyrin repeat region circular profile. 86 118 - -
Pvu8g1971 473 ProSiteProfiles Ankyrin repeat profile. 86 118 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1971 Pvu-Chr8 49551617 49558292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1971 21 443 MAP Kinase Kinase Kinase AT4G18950 65.278 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Pvu8g1971 PK_Tyr_Ser-Thr 5.3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1971 - - gmx:100795964 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1971 8 49551617 49558292 Pvu9g0371 9 7621800 7629362 PCT