Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1970 ATGGGTTATTTATGTGATTTTTGTGGAGACCAGAGGTCATTGGTGTACTGCCGCAGTGATGCTGCATGCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAATGCCCTATCTAGGCGTCATTCGAGAAACCTTCTATGTGAGAGATGTAATTTACAACCTGCTTTTGTGAGGTGTGATGAAGAGAAAATTTCACTTTGTCAGAACTGTGATTGGTTGGCTCATGGTTCCTCACCGACTTCTTCGACACACAAGAGGCAGACAATCAATTGCTACTCTGGCTGCCCTTCAGCTGCAGAATTTTCTTCAATATGGTCCTTTTTCTTAGATATCCCTTCTATGGGTGAAGCGTGTGAGCAGGAACTGGGTTTGATGAGCATTAATGAGAATGGCAACAAGAGTGATTTGGTTCCTCCAGAAGGGCAGAATGTGTCTGGTTCAGCTCAAGTGACAGATCTACCCACCAAGGTTAAATTTTGGGCCGGCACATCTTCAATACCTGTGTCAGGCTCAGAACCTCGTATTCTGGACCAGCCACCTGGGCCTGGCAATGAATGTATGCCCAAGTTGTACTGTCCTGGGAAAAAAAATTCTGGGATATGTGAAGATGATAATCTATATGATGATTTCATCATGGATGAAGTGGATCTAGAACTTGAGAACTACGAGGAACTTTTTGGGATGGCTCTCAGTCATTCTGAAGAGCTTTTCGAAAATGGTGGATTTGAGAGCTTATTTGAGGCAAAAGACATGTCTGCTAGTGTTGGTGAATCTCACTGTCAGGGTGCTGTTGTTGCTGAGGGATCATCTGCTGGGTTGGTCAATGCTATCCAATCAGCATGCAGCAATGCAGCATCTGCAGATTCAATGTTGAGTACAAAAACTGAACCAATTGTTTGTTTTACGGGAAGGCAATCTCAATCAAACATTTCTTTTTCTGGTGTTACAAAAGAAAGTGCTGGTGACTATCAAGACTGTGATGCTTCTTCAATGCTTCTTATGGGAGAGCCTCCCTGGTGTCCTCCTTGCCCTGAGAGTTCTCTGCATTCTGCCAACCGTAGCAATGCTGTAATGCGCTATAAGGAAAAGAAGAAGACCCGGAAGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAGGCGTGTGAAGGGCCGATTTGTTAAAGCCGGTGATGTCTATGACTATGACCCTTTGAGCCAAACCAGAAGCTTCTGA 1236 0.4442 MGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRNLLCERCNLQPAFVRCDEEKISLCQNCDWLAHGSSPTSSTHKRQTINCYSGCPSAAEFSSIWSFFLDIPSMGEACEQELGLMSINENGNKSDLVPPEGQNVSGSAQVTDLPTKVKFWAGTSSIPVSGSEPRILDQPPGPGNECMPKLYCPGKKNSGICEDDNLYDDFIMDEVDLELENYEELFGMALSHSEELFENGGFESLFEAKDMSASVGESHCQGAVVAEGSSAGLVNAIQSACSNAASADSMLSTKTEPIVCFTGRQSQSNISFSGVTKESAGDYQDCDASSMLLMGEPPWCPPCPESSLHSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSQTRSF* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1970 411 SMART bboxneu5 48 90 IPR000315 GO:0008270
Pvu8g1970 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pvu8g1970 411 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Pvu8g1970 411 CDD Bbox1_BBX-like 47 90 - -
Pvu8g1970 411 CDD Bbox1_BBX-like 4 44 - -
Pvu8g1970 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
Pvu8g1970 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 411 - -
Pvu8g1970 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Pvu8g1970 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pvu8g1970 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1970 Pvu-Chr8 49495894 49506394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1970 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 56.161 7.70e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pvu8g1970 CCT 2.5e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1970 - - gmx:100783016 731.095