Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1966 ATGGCAGAGGGAGAGAACATAGAAGTGGAAACAGAAGCAGAATCTGAAACATCGTCGTCATGGAACCTCGGAAAACACACTCAGATAATCGAGCTGTCGGAGAAGTTGTTGTATGGGAACCTCAGCGCCAAGATTGAGGCTGCCAGGGAGATAAGGAAGATGGTTCGGAAATCATCGTCCTCGTCGAAGATACGTGCGAAGCTCGCCTCCGCGGGTGTGATTGAACCGCTCGTGCTGATGCTGTCTTCTTCCAACATCGACGCTCGCCAATCCTCTCTTCTCGCTCTCCTTAACCTCGCTGTTCGCAATGAACGAAACAAGGTCAAAATAGTAACAGATGGTGCCATGCCTCCACTGGTGGAGCTCCTCAAGATGAAAAATAGCGGTATACGAGAATTAGCTACGGCTGCAGTCTTGACACTCTCAGCTGCTGCATCCAACAAGCCCATTATTGCTGCTTCTGGAGCCGCACCTTTCCTTGTTCAGATTCTCAAATCTGGAAGTGTTCAAGGAAAAGTTGATGCTGTTACAGCCCTCCATAATCTTTCTACCAGCAATGAGAATTCCATTGAACTTCTTGATCCAAGTGCTGTTTTCCCTCTGATCAACCTTCTTAAAGAGTGCAAGAAGTATTCCAAGTTTGCAGAAAAAGCCACAGCACTGCTTGAAATCCTTTCCAACTCCGAAGAAGGGCGAACTGCAATCTCAATTGCAGACGGTGGAATCTTAACGCTAGTTGAGACAGTTGAAGATGGATCACTTGTGAGCACAGAACATGCTGTAGGAGCTCTGCTATCTTTATGCCGAAGCTGCCGAGATAAATACCGTGAACTGATTCTTAAAGAAGGAGCGATTCCGGGTCTGTTACGTCTGACCGTGGAGGGCACAGCTGAAGCTCAAGATAGAGCTCGTGTGCTACTGGATTTGCTCAGAGATTCTCCCCCAGAAAAGAGACTAACCTCATCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAACGGGTAGATGGAGCAGATAAAGCTGCTGAAACTGCCAAACGGTTATTGCAAGATATGGTTCAAAGGAGTGTGGAACACAGCATGAAATGCATCCAGCACAGGGCTGCATCTTGCACTCCTTCTATTCCTTCCACTTGA 1137 0.4705 MAEGENIEVETEAESETSSSWNLGKHTQIIELSEKLLYGNLSAKIEAAREIRKMVRKSSSSSKIRAKLASAGVIEPLVLMLSSSNIDARQSSLLALLNLAVRNERNKVKIVTDGAMPPLVELLKMKNSGIRELATAAVLTLSAAASNKPIIAASGAAPFLVQILKSGSVQGKVDAVTALHNLSTSNENSIELLDPSAVFPLINLLKECKKYSKFAEKATALLEILSNSEEGRTAISIADGGILTLVETVEDGSLVSTEHAVGALLSLCRSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGADKAAETAKRLLQDMVQRSVEHSMKCIQHRAASCTPSIPST* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1966 378 SUPERFAMILY ARM repeat 36 325 IPR016024 -
Pvu8g1966 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 156 IPR000225 GO:0005515
Pvu8g1966 378 Pfam Armadillo/beta-catenin-like repeat 103 141 IPR000225 GO:0005515
Pvu8g1966 378 SMART arm_5 61 101 IPR000225 GO:0005515
Pvu8g1966 378 SMART arm_5 228 269 IPR000225 GO:0005515
Pvu8g1966 378 SMART arm_5 102 143 IPR000225 GO:0005515
Pvu8g1966 378 SMART arm_5 144 184 IPR000225 GO:0005515
Pvu8g1966 378 SMART arm_5 185 227 IPR000225 GO:0005515
Pvu8g1966 378 MobiDBLite consensus disorder prediction 1 20 - -
Pvu8g1966 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 72 114 IPR000225 GO:0005515
Pvu8g1966 378 Gene3D - 172 365 IPR011989 -
Pvu8g1966 378 Gene3D - 25 169 IPR011989 -
Pvu8g1966 378 PANTHER U BOX DOMAIN-CONTAINING 14 344 - -
Pvu8g1966 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 240 IPR000225 GO:0005515
Pvu8g1966 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 155 197 IPR000225 GO:0005515
Pvu8g1966 378 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1966 Pvu-Chr8 49428095 49433070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1966 27 312 U-box Gene Family AT3G54790 37.979 2.13e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1966 K08332 - gmx:100782472 632.098