Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1958 ATGAAAGCAATAAACTTTTCTGGTAGCATAGCAAAACCCAGTTTTTTGATTGGCCATTCGGAAATGCCTATTCTAACATTTGGTCATTGTAAGCTGAGTGCTACCCTTGCTTTACGGTTATCTCGTGATTGCATTAGGAGGATGGAATTGATTACGAAACTTCACTATTCTGTTGCTGATAGGACATTTAGTTCTGGTTCTGTGTATTCGCCGGCGTCTGATTCGGACTCCGGTAGATTGAATCGTAGGCGGGGAGGTTCCTCATCGATATATAGCCGTCCTAGTTTATCAGAAATGAAGAAAGAGAAGGCTGCAATAAGGGAAAAGGTTTATGAATTCTTGATGTCACTTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTGACTGTTGATGTTATGAGGGAGCGCATAGAGTTTCTTCATAGTTTGGGGCTTACAATTGAAGACATCAACAACTATCCACTTGTTCTTGGCTGCAGCGTCAAGAAGAACATGATTCCTGTGCTTGACTATCTTGGTAAATTGGGAGTGAGGGAATCCTCTATCACGTGGTTCTTGCAGAGGTACCCACAAGTTCTCCATGCTAGTGTTGTTGTGGATCTTATGCCGGTGGTAAATTATCTTAAGGGGATGGATATCAAGCCTGAGGATATCCCTCGTGTTCTTGAGAGGTACCCTGAATTGCTTGGCTTCAAACTTGAGGGAACCATGAGCACCTCGGTTGCTTATTTGATTGGAATTGGTGTAGGAAGAAGAGAAATTGGGGGTATTTTAACTAAATTTCCAGAGATTTTGGGGATGCGAGTTGGTAGAATTATCAAGCCTTTTGTGGAGTATATGGAAAGTTTGGGGATTCCAAGGTTAGCCATTGCTAGACTGATAGAGCAACGACCCTATATTCTTGGATTTGGGCTGGATGAGAAGGTGAAACCAAATGTTAAATCCCTTGAAGTGTTTAATGTGAGGCGAACATCACTTCCGTCTATAATTGCTCAGTATCCTGACATCATTGGAACTGATTTAAATTCAAAGCTTGCCAATCAGAGAAGTATACTCAATTCTGTACTTGATTTGGATCCAGAGGAATTTGGCCGAGTTGTTGAGAAGATGCCACATGTAGTTAGCCTCATTAGGGGACCTATGCTGAAGCATGTTGATTTTCTTAAGGATTGTGGCTTTTCATTGCCACAGATGAGGAAGATGATTGTTGCATGCCCTCAATTACTCGCTTTAAACATTGACATCATGAAACTTAGCTTTGATTACTTCCAAATGGAGATGAAAAGGCCTTTGGAAGACTTGGTTACATTCCCTGCATTCTTCACTTATGGTTTGGAGTCAACTATAAAGCCTAGGCATGTGATGGTTGCCAAGAAAGGGTTAAAGTGTTCTCTGTCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGACATGGAAGAAATGGAAATGGAATCATCATTTGACATGAATTCACTAACACAACCAAGGAGTGATGATGAATCAGATTTTGACTATGAAGACAGTGATGAAGATAATGAGTAG 1578 0.4087 MKAINFSGSIAKPSFLIGHSEMPILTFGHCKLSATLALRLSRDCIRRMELITKLHYSVADRTFSSGSVYSPASDSDSGRLNRRRGGSSSIYSRPSLSEMKKEKAAIREKVYEFLMSLGIVPDELDGLELPVTVDVMRERIEFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRESSITWFLQRYPQVLHASVVVDLMPVVNYLKGMDIKPEDIPRVLERYPELLGFKLEGTMSTSVAYLIGIGVGRREIGGILTKFPEILGMRVGRIIKPFVEYMESLGIPRLAIARLIEQRPYILGFGLDEKVKPNVKSLEVFNVRRTSLPSIIAQYPDIIGTDLNSKLANQRSILNSVLDLDPEEFGRVVEKMPHVVSLIRGPMLKHVDFLKDCGFSLPQMRKMIVACPQLLALNIDIMKLSFDYFQMEMKRPLEDLVTFPAFFTYGLESTIKPRHVMVAKKGLKCSLSWMLNCSNEKFEQRMDYDTIDMEEMEMESSFDMNSLTQPRSDDESDFDYEDSDEDNE* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1958 525 PANTHER CGI-12 PROTEIN-RELATED 51 513 IPR003690 GO:0003690|GO:0006355
Pvu8g1958 525 Pfam mTERF 172 480 IPR003690 GO:0003690|GO:0006355
Pvu8g1958 525 MobiDBLite consensus disorder prediction 66 93 - -
Pvu8g1958 525 Gene3D Transcription termination factor 3, mitochondrial 276 488 IPR038538 -
Pvu8g1958 525 Gene3D Transcription termination factor 3, mitochondrial 137 275 IPR038538 -
Pvu8g1958 525 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Pvu8g1958 525 SMART mt_12 330 362 IPR003690 GO:0003690|GO:0006355
Pvu8g1958 525 SMART mt_12 87 120 IPR003690 GO:0003690|GO:0006355
Pvu8g1958 525 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Pvu8g1958 525 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Pvu8g1958 525 SMART mt_12 367 397 IPR003690 GO:0003690|GO:0006355
Pvu8g1958 525 SMART mt_12 434 465 IPR003690 GO:0003690|GO:0006355
Pvu8g1958 525 SMART mt_12 402 433 IPR003690 GO:0003690|GO:0006355
Pvu8g1958 525 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Pvu8g1958 525 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Pvu8g1958 525 MobiDBLite consensus disorder prediction 496 525 - -
Pvu8g1958 525 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF4, CHLOROPLASTIC 51 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1958 Pvu-Chr8 49316323 49317900 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pvu8g1958 mTERF 7e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1958 K15032 - gmx:100785223 819.305