Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1931 ATGGGTAGGCGAAAAAGCAAACCAAATCGAGCAGGCGGGATAATACTTGAGACAGATGCTTCTGCTGAGACAGAATTGAATAAACAAAATGTTGGAGAAGGAGGGGAAGAAGCAAAAGGTAGTTATGGTAACATCGATAAACCTTATTTTGTGGAGGTTGCTCGGTTGGATTGGTTGTCGAGTGAACACCTTGATATTTCTGAGGTTGTTTTGAGGGATTTAAAATTGAGTGAAGGTTTTTCTGGTTTTGAATTGTCTGAGGATTTTTGTCGGGATCAGCAGTATTTGTTAAGATTTCGAGTATGTAATGTCAGTAATGTTCTTGGTCGAATCAAATTAGGCCATTGGCCTGTGTTACCCTATACTGATATTCATCTAGAGTTTGCAAGAAGAGTTACCGTTGACCATGTGGAAACATGTACAGTGTTGTTATCTGGTGTTTTTGACGGACCTGATGAAGGTGTTACTGGTCTTCTTCACTTGGCAAGTTTGAAGTTTGTTACACTGAGGCCAGTTCTTGGGGTAAGGCTTTCTGAGGAAATTTCCACTCTGAGGGTAAGGGTTGAGGTATTAAAGAGTGCCTTTAATGCATGTGAGTCGCTTCTTGATACTTCTAGACAACTATGGAAAAAGAGTATGGTAAATGTAATGTCTTGGTTGCGTCCAGAAATAATGGATTTGGAAGTTAGGTATGGGTTCTTTAGCTGTATGAAAATGGATGGTGATCCACAGACAGAGATGGTAGATGACACTTGCAAGGCAAGGAAACATGCAAGATTTGATCCTGCAGGTTTATATGAAGCCATTAAGCCTTCAAAAGCTGAGCCAATGCTTGAAGATGACATACCAGAGTTACTTCCTAAATTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAAAGAGAGAAAGCAGTGGAAGAAAGTCAGGGTGAAAGAGAAAGAAATCAGTTTCATTCTCCATTATGCATACCTGTGGATTTTCTGAACACCAGTTCTCAAATGTTTTTCAATCCATTCAGATCAGCATCTGGAAGTGACATATTATTTGATTTAGAGCCACAAATTAACGGGGACCAAAAAGTCACTTTGAAAAGAGTCAAAAGAGATCGTGTGGAGTGCATGTGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAGCATGCGGATTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACCATGGCTGTGAGGGATGGAGAATATGTATGTCATATGTGCTCTGAACTAATTCAAGCTACTGAATCTCCTATTGCCTCTGGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGCCATACACATCATGGCTCCTTGAAAACTTGTGTCTACGAAGGTGTGCGAGAAACATCTTTTTCCAATGCGTCTGTGATGGATATCAGTGATCTTGCCAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAGGATCTGTCGCATGATTCTGATAGGCATGTGGGTGATCGACACTTTCTGAGGTTTCAAAAGAGGTACCCTGTCATCCCAACTCTTCTTACGAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAAAGTAATAGTACAGCTTCCACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGATGGTGCATTACTGGTACCCCAATTCAGCGAAAACTTGATGACTTATATGGACTTCTAAGGTTTCTTGTGGCCAGTCCTTTTGATAAATACAGGTGGTGGACTGATGTTATTCGAGATCCTTATGAGAAGGGAGATGTGCGAGCTATGGAATTTACACACAAAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAAAACATGTTGCAGATGAATTGGACCTTCCATCCCAAGAGGAGTGCCTTTCTTGGCTTTCACTCTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGACAAGGCCCAGATTCTATCTCTTTGCAAAGTTCCTCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGCTCCCTACAACAAACACCAATGACTATGGAAGAAATACTAATGGTTCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTTTGAATGCGCTTGCAGCTATTGCTGCAATACAAAAAGATTTTTCTGAAGCTACATCACTGTACAGTGAAGCTCTTACTTTGGCTGGAGAGCATTCTGAAGATTTTCGCCTGGATCCTTTGTTAAATATTCACATTCATCATAATCTTGCTGAAATACTGCCACTTGCTTCAAACTTTGCATTAATATTGGCATCCAAAGGAAAACAATTATCTGAAAGTTCTGAATTTAAGATGACCAAAAGGCATTTAATTGTAAAGGTTGACAGTTGTCATGTGAAGAGGCAAAAAATAAGTGGTTGTGATGACATAAATGTAACCGTGCCATCGGCAGAACTATCAAATGTTAGCCTTTCAGAAAATGACACAAAGGAGGATCAGGAATTTGATAATTTATCAGCCAATTCTGTCAAATCTCTAATAGCAGAATGTGAAGATTCAAAACAGAAATACTTATCTGTCTTCAGTTCAAAGCTATCTGCAGCCCAACAGGAGTTTCAAAGTTCTTACATTCAGGTCAGTAATGCTTATCGTGACAGTAGAACAGATCAAAATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAACAGAGCAAAGATTTCTCTACTGAGTTGATTAGAAAGATTGAAGAAGCCATCTCGGGAGCTTCAAGCAATTCAAAGTCATCAAGAATAACTGCTCGTTTCCGAAGCATAAGCTCTCTAAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACACTACTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGTGTGGGCAAATGTCAAAATTGTCAGCCTAATTGTGATGGTCCCCCGTGTATTTTGTGCGAACTAGATGGATTGTTTCAGGATTATGAAGCAAGACTCTTCATTCTTAAGAATGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAATGTTGCACTGAATCATTTCCTCTCAAAGCTATCACAATCTAGTAACAGTTCTACAACATCTGATATTGGTCATGAGGAATCAAAGAAAAGGAATGTTGGACAAAGAGTAGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTAATTCTTGGAGTTATAAAGAACTACTGCAAGGCTCGATTAGGAAGGGACTCTGTCTCAGCTGCCACCAAGGATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATACAGATGGCTGTTTCCCGTCTGCACCTAAGGGCAAGCGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAGTTAGTTGCCGCTAGCTCCAACTTTTCCCATGAAAAGTTTATGTCATTGACCATGTTGTCCCAGACGAAAGGAAAACTCCGTTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAAATGCAATTTGAAAGTCCAAACAGTTCTTCATTCACACGAGAAACAACTGCAATGTCAAACTCTACAGAAGAGAAGGCTGTACTTATAGCTAAAACTGATGATGAAACATGCCCAGTCTGTCAAGAAAAGCTAGGCAATCAGAAGATGGTTTTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGGTTCATAATTGGGTGATGTGCCCTACATGTCGGCAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATTCACAGAATGAATCTTCCAATCTTTCAGTGCTGCATACAATTGACAGCAGTGAAAAGTGTGAAGCGTCCATTAGCGTCAAAGGATCATACGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAAAGCAAAAGTTCTTGTGTTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATGCCTTTACTGCCAATAACATTACCTTCATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAAGAGAATGATACAAAAGGATGTGAGGGGTCAACACCAAAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGTGCGAATGGACTCAATCTTTTGGAAGCGCAGCATGTGGTTCTTGTAGAGCCATTGCTAAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGGATTGGACAAAAACATAAGACCCTCATTCATCGTTTCATTGTGAAAGACACGGTTGAAGAGAGTCTATATAAATTGAACAGAAGCAGGAGCAATCATTCATTCATCAGTGGAAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGTTGTCTAGAGCACCTCTTACTATGCCAGAAAGTGAAGAAAATCTTGGCACAAACACAAATCTTAGACACTTGCCACCATCAGTAGCCGCTGCTATAGCTGCTGAGAAGAGACTTAATGAACAAAGGACATGA 4890 0.402 MGRRKSKPNRAGGIILETDASAETELNKQNVGEGGEEAKGSYGNIDKPYFVEVARLDWLSSEHLDISEVVLRDLKLSEGFSGFELSEDFCRDQQYLLRFRVCNVSNVLGRIKLGHWPVLPYTDIHLEFARRVTVDHVETCTVLLSGVFDGPDEGVTGLLHLASLKFVTLRPVLGVRLSEEISTLRVRVEVLKSAFNACESLLDTSRQLWKKSMVNVMSWLRPEIMDLEVRYGFFSCMKMDGDPQTEMVDDTCKARKHARFDPAGLYEAIKPSKAEPMLEDDIPELLPKLRPYQRRAAFWMVEREKAVEESQGERERNQFHSPLCIPVDFLNTSSQMFFNPFRSASGSDILFDLEPQINGDQKVTLKRVKRDRVECMCGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCESKTYKTTMAVRDGEYVCHMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTHHGSLKTCVYEGVRETSFSNASVMDISDLASADIVLTTYDVLKEDLSHDSDRHVGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNSTASTEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLVASPFDKYRWWTDVIRDPYEKGDVRAMEFTHKVFKQIMWRSSKKHVADELDLPSQEECLSWLSLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRQGPDSISLQSSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQKDFSEATSLYSEALTLAGEHSEDFRLDPLLNIHIHHNLAEILPLASNFALILASKGKQLSESSEFKMTKRHLIVKVDSCHVKRQKISGCDDINVTVPSAELSNVSLSENDTKEDQEFDNLSANSVKSLIAECEDSKQKYLSVFSSKLSAAQQEFQSSYIQVSNAYRDSRTDQNTFWWLEALHHAEQSKDFSTELIRKIEEAISGASSNSKSSRITARFRSISSLKYQIQTGLDQLEASRKTLLDRLLEIDQTMEKPKEEDIERVGKCQNCQPNCDGPPCILCELDGLFQDYEARLFILKNERGGIISSAEEAVDFQKKNVALNHFLSKLSQSSNSSTTSDIGHEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGRDSVSAATKDLHVFEGMRKEFGHARSLALAQAQYLRAHDEIQMAVSRLHLRASEDDKSLDALGENELVAASSNFSHEKFMSLTMLSQTKGKLRYLKGLVQSKQKMQFESPNSSSFTRETTAMSNSTEEKAVLIAKTDDETCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQNSKVHNWVMCPTCRQHTDFGNIAYAVDSQNESSNLSVLHTIDSSEKCEASISVKGSYGTKIEAVTRRILWVKANDHKAKVLVFSSWNDVLDVLEHAFTANNITFIRMKGGRKAHVAISQFRGKENDTKGCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKHKTLIHRFIVKDTVEESLYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESEENLGTNTNLRHLPPSVAAAIAAEKRLNEQRT* 1630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1931 1629 Gene3D - 1388 1600 IPR027417 -
Pvu8g1931 1629 SMART PHD_3 374 442 IPR001965 -
Pvu8g1931 1629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 660 IPR027417 -
Pvu8g1931 1629 Coils Coil 1027 1047 - -
Pvu8g1931 1629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 554 1585 IPR027417 -
Pvu8g1931 1629 CDD PHD_TCF19_like 376 420 - -
Pvu8g1931 1629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 368 440 IPR013083 -
Pvu8g1931 1629 Gene3D - 441 669 IPR038718 -
Pvu8g1931 1629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1300 1387 IPR013083 -
Pvu8g1931 1629 SMART ring_2 1316 1363 IPR001841 -
Pvu8g1931 1629 SUPERFAMILY RING/U-box 1311 1368 - -
Pvu8g1931 1629 Pfam Helicase conserved C-terminal domain 1411 1533 IPR001650 -
Pvu8g1931 1629 ProSiteProfiles Zinc finger RING-type profile. 1316 1364 IPR001841 -
Pvu8g1931 1629 CDD DEXQc_SHPRH 441 648 - -
Pvu8g1931 1629 SMART helicmild6 1441 1533 IPR001650 -
Pvu8g1931 1629 SMART ultradead3 285 618 IPR014001 -
Pvu8g1931 1629 SUPERFAMILY FYVE/PHD zinc finger 371 443 IPR011011 -
Pvu8g1931 1629 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1413 1584 IPR001650 -
Pvu8g1931 1629 ProSitePatterns Zinc finger PHD-type signature. 375 441 IPR019786 -
Pvu8g1931 1629 CDD SF2_C_SNF 1407 1544 - -
Pvu8g1931 1629 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 358 1600 - -
Pvu8g1931 1629 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 342 - -
Pvu8g1931 1629 Pfam SNF2-related domain 432 744 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1931 Pvu-Chr8 48948583 48963247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1931 453 742 RAD5 or RAD16-like Gene Family AT5G43530 31.399 2.43e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu8g1931 SNF2_N 1.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1931 K15710 - gmx:100776659 2861.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1931 8 48948583 48963247 Pvu8g1931 8 48948583 48963247 ECH