Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1922 ATGTGGGATCTCAATGACTCTCCCGATCAGAGGAAGAACTACCAATATGAAGGTTGCTCTTCATCGCGGAATGACGATAAAGGCAAGAGAGTGGGAAGTTCCTATCCCGTGGTCCTCCAAGATGAATTGGAAGAAAAAGATAGTGACAAGGATGGAAGCAGAACATTGGAGAAAAAAACCATTAAAATATTCGGCTCTTCAATTACACACCAACACACTCACCACCTACCCGTCACCCGCCAGTTTTTTCCGGTCAAGGATTCCGACCTTCCTGTCTCCGAAGCCGCCGCCGGCCCAAGCTCTTCCTTCCCTCGTGCTCACTGGGTAGGCGCCAAATCTTGTCAGTCGGAAACTCTTGGCACCGGTAAATCAGTGAAATTGTGGGAGAAGATGAAGAAAAGGCAAGCACGAGCACCACCATCGGGAAACTTACAGTATCGTGGAGTTACCTTTAACAGAAGAACCGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAGCAAGTGTATTTGGGTGGATTTGACTCAGCACATGCAGCTGCTCGTGCGTATGATAGAGGGACCATTAAGTTCCGGGGGGTGGACGCAGATATCAACTTCAACATAAAAGACTATGAAGAAGAGATGAAGAAGTTGATCAATTTTACCAAGGAAGAGTTTGTGCACCTACTTCAGCAAAGCACTGGATTTCCGGAAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAACTGTGGAAAATGGAAGGCTCAATTTTCGGCCAAAAACTGCGTTTATGTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACGAAGAGGCAACAAGATGCATCGGCGAAGAGGCTGTCACCAATTTTGATCCAGCATCTATGATAAATGTTGTCGACGAAAGGAATGATGAAAGATCAGATAATGAGATGCAGAATCAGGAGAATGAGAGTTTGTATGATAAATTTCGAGGCAAAGCAAAGATTAGTGATTCTATAAGTTCATTGCTCTCATTATCAGAAAGTTCTGACAAAGGCTCTGATTTATCAAATTCACACGATTATTCCGGTCCCTCATGA 1077 0.4475 MWDLNDSPDQRKNYQYEGCSSSRNDDKGKRVGSSYPVVLQDELEEKDSDKDGSRTLEKKTIKIFGSSITHQHTHHLPVTRQFFPVKDSDLPVSEAAAGPSSSFPRAHWVGAKSCQSETLGTGKSVKLWEKMKKRQARAPPSGNLQYRGVTFNRRTGRWESHIWDCGKQVYLGGFDSAHAAARAYDRGTIKFRGVDADINFNIKDYEEEMKKLINFTKEEFVHLLQQSTGFPEGSSKYRGVTLHNCGKWKAQFSAKNCVYVGLFDTEIEAARAYDEEATRCIGEEAVTNFDPASMINVVDERNDERSDNEMQNQENESLYDKFRGKAKISDSISSLLSLSESSDKGSDLSNSHDYSGPS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1922 358 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 298 - -
Pvu8g1922 358 MobiDBLite consensus disorder prediction 337 358 - -
Pvu8g1922 358 MobiDBLite consensus disorder prediction 301 322 - -
Pvu8g1922 358 Pfam AP2 domain 235 275 IPR001471 GO:0003700|GO:0006355
Pvu8g1922 358 Pfam AP2 domain 145 186 IPR001471 GO:0003700|GO:0006355
Pvu8g1922 358 ProSiteProfiles AP2/ERF domain profile. 145 201 IPR001471 GO:0003700|GO:0006355
Pvu8g1922 358 CDD AP2 235 292 IPR001471 GO:0003700|GO:0006355
Pvu8g1922 358 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 298 - -
Pvu8g1922 358 Gene3D AP2/ERF domain 235 291 IPR036955 GO:0003700|GO:0006355
Pvu8g1922 358 Gene3D AP2/ERF domain 144 203 IPR036955 GO:0003700|GO:0006355
Pvu8g1922 358 MobiDBLite consensus disorder prediction 1 53 - -
Pvu8g1922 358 CDD AP2 145 202 IPR001471 GO:0003700|GO:0006355
Pvu8g1922 358 ProSiteProfiles AP2/ERF domain profile. 236 290 IPR001471 GO:0003700|GO:0006355
Pvu8g1922 358 SUPERFAMILY DNA-binding domain 145 202 IPR016177 GO:0003677
Pvu8g1922 358 SMART rav1_2 145 207 IPR001471 GO:0003700|GO:0006355
Pvu8g1922 358 SMART rav1_2 236 296 IPR001471 GO:0003700|GO:0006355
Pvu8g1922 358 SUPERFAMILY DNA-binding domain 235 290 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1922 Pvu-Chr8 48884848 48891709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1922 1 315 AP2-EREBP Transcription Factor Family AT4G36920 51.952 2.02e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pvu8g1922 AP2 1.3e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1922 K09284 - gmx:100786333 425.246