Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1916 ATGGAACTTTATGATCATGATTTCTTGGAGGAATCTACTGCTCTAAGAAGAGAACCATGGGATACCAATCCACGTTCACAAGAAAACCAGCCTTTCTCTAATGCCTGGAGTTTTGATTGTTTTGATCAAAACTATCAATCTTTTCCTTCAAATTCTTTCTGTTTCCAACAAGTTCCTCAGAGTTACAATTTCGACTACACCTTCAATGAAATCTATAGTTCTTTGCTTGATGAATTCTCTGCACCCCAAATTGTAGATTCATCTTATAACACCCCTCCATTTGTGGCTCATGAAGATTATCCACTGTCCATGATGGAAGAAGAAGATCCGGGTTTGCTTGGGGAAGAGCTTCATTGTTTGGACCTTCAAGCCACATGCAAAATGGAGCCAAGCCATTCCCCTGAAAGGCCTGTTTTCAACACAGATCCATGTGTGGAAAGAAAGAATAATAGAGCAAAGAAGCTTCAGGGGCAGCCTTCCAAGAACCTAATGGCAGAGAGGAGAAGAAGGAAGAGATTAAACGACAGGCTCTCCATGCTAAGATCAATTGTCCCAAAGATAAGTAAGATGGACAGAACATCTATACTTGGAGACACTATCGATTACATGAAAGAGCTCTTGGAAAAGATTAACAATTTGAAGCAAGAAATAGAAGTGGATTCCAACACGGCTACCATTTTCAAGGATTCAAAGCCAAACGAACTCTTAGTAAGAAATTCTCCCAAGTTTGATGTGGAGAGGAGAAATGGCAATACAAGGGTGGAGATCTGCTGTGCAGGGAAGCCAGGCTTGTTGGTGTCTACAGTAAACACATTGGAAACATTAGGTCTCGAGATCCAGCAATGCGTTATTAGCTGTTTCAATGATTTCACAGTGCAAGCTTCTTGTTCAGAGCAGAAGACAATTCTTAGTTCTGAAGATATAAAACAAGCACTATTTAGAAGTGCAGGATATGGAGGAAGATGCTTGTGA 972 0.4053 MELYDHDFLEESTALRREPWDTNPRSQENQPFSNAWSFDCFDQNYQSFPSNSFCFQQVPQSYNFDYTFNEIYSSLLDEFSAPQIVDSSYNTPPFVAHEDYPLSMMEEEDPGLLGEELHCLDLQATCKMEPSHSPERPVFNTDPCVERKNNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINNLKQEIEVDSNTATIFKDSKPNELLVRNSPKFDVERRNGNTRVEICCAGKPGLLVSTVNTLETLGLEIQQCVISCFNDFTVQASCSEQKTILSSEDIKQALFRSAGYGGRCL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1916 323 Pfam Helix-loop-helix DNA-binding domain 163 206 IPR011598 GO:0046983
Pvu8g1916 323 CDD ACT_UUR-ACR-like 252 293 - -
Pvu8g1916 323 PANTHER DNA BINDING PROTEIN 3 323 - -
Pvu8g1916 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Pvu8g1916 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 219 IPR036638 GO:0046983
Pvu8g1916 323 Gene3D - 165 239 IPR036638 GO:0046983
Pvu8g1916 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 323 - -
Pvu8g1916 323 SMART finulus 163 212 IPR011598 GO:0046983
Pvu8g1916 323 Coils Coil 196 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1916 Pvu-Chr8 48684565 48686327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1916 56 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 49.013 8.98e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu8g1916 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1916 - - vra:106764382 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1916 8 48684565 48686327 Pvu8g1916 8 48684565 48686327 ECH