Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1903 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCGACGAGTAGGCAAGTCACCTTCTCGAAGCGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTGGGAGTTATGATTTTCTCCAGTACAGGAAAACTCTACGATTTCGCCAGCTCCAGCATGAAATCGGTAATTGACCGATACAATAAATCAAAAGAAGAAAATTTTCAACTTGGGAGTTCAACCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGCAAAATCATGGGGGAAGAACTGTCAGGTTTGACAGTCAAAGAATTACAAAATTTGGAGAAGCAATTAGAAATAAGCCTTCGTGGTGTCCGTATGAAAAAGGATCAACTTTTAGTGGATGAAATACAAGAACTAAATCGAAAGGCAAACCTCATTAGCCAAGAAAATGTGGAACTGTATAAGAAGGTCTATGGAACAAAAGATGATAGCGAAACAAACAGAGATTATGTTCTGACAAATGGTCTAGGCATGGGAGAGGATTTGCAATTGCCCGTGAATCTCCAGCTAAGCCAGCCACAGCAACAACACTACAAGGCTCCTTCAGGAATTTCGAAATTGGGCAGATTGCAATTGCATTGA 681 0.417 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVIDRYNKSKEENFQLGSSTSEIKFWQREAAMLRQQLHNLQESHRKIMGEELSGLTVKELQNLEKQLEISLRGVRMKKDQLLVDEIQELNRKANLISQENVELYKKVYGTKDDSETNRDYVLTNGLGMGEDLQLPVNLQLSQPQQQHYKAPSGISKLGRLQLH* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1903 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Pvu8g1903 226 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Pvu8g1903 226 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu8g1903 226 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Pvu8g1903 226 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 224 - -
Pvu8g1903 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu8g1903 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu8g1903 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu8g1903 226 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu8g1903 226 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pvu8g1903 226 Coils Coil 86 106 - -
Pvu8g1903 226 Coils Coil 149 169 - -
Pvu8g1903 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu8g1903 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu8g1903 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu8g1903 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1903 Pvu-Chr8 48502565 48515663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1903 1 214 MADS-box Gene Family AT4G37940 64.019 2.11e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu8g1903 K-box 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1903 K09264 - gmx:100812413 397.127