Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1901 ATGGCCTCACCAGCTGCAGTGAAATTGTATATGGAAGACGATCAAGTGGTTATGGACAATGGCATAGTGCAGGTGTATTTATCCAACCCTGGTGGATTTGTTACTAGAATTCAGTATAATGGCATTGATAATCTGCTTGAAACTCGTAACAAAAGTGGAGATAGAGGGTACTGGGACGTTGTTTGGAGTGTAGCTGGAAGTACAGGAACAACTGGGACATTCCAAAGGATTGTGGGAGAAAGTTTCAGAGTTATAATGGAAAATGAAGAAGAGGTTGAAATCTCATTCACAAGTAAGTGGGAACCATCTCTGGAGGGAGAGAGAGCACCTCTTAATATTGATAAGAGGTATGTGATGCTTTGTAACTCCTCAGGATTCTACTCATACACCATCTTTGAACACCTACAGGAGTGGCCTGCTTTCAACATACCTCAAATAAGGACTGTTTACAAGCTTAGTAAAGACAAGTTTCATTACATGGTGGCTTCGGATAATAGACAAAGATTTATGCCTCTCCCTGACGACAGATTACCTGGAAGAGGAGAAGTTCTTGTTCCGCCGGAAGCAGTTTTGCTAGTTAATCCTTTGGAGCCAGAGTTTAAAGGAGAGGTGGATGACAAGTACCAATACTCAAGTGAGAACAAAGATCTTAATGTTCACGGGTGGATAAGTTCTGAATCTCAAACCGATCCATTTATAGGGTTTTGGGTAATCATACCAAGCAATGAGTTTCGATCCGGTGGTCCACTAAAACAGAATCTTACTTCCCATGTCGGCCCAATAAGCCTAGCTATGTTTCTGAGTGCTCATTACGCAGGAGAAGATATAGTTCTGAAACTCCAACCAAACGAGCCATGGAAGAAAGTTTTTGGACCGACTTTTGTTTATCTTAACACTTTATTAGAGGGTGATGACCCGCTTCTGCTATGGGAAGATGCTAAATACAAGACGAACGCAGAGGTTCAAAGTTGGCCCTATGATTTTCCAGCCTCCGAAGATTTTCAGAAGTCTAGCCAACGGGGCAGTGTCTGCGGCACATTACTAGTCAAAGACAGGTTTTTAAGTGATGAGAAGATAATAGCAGAAGGCGCTTATATAGGACTGGCACCACCAGGAGAAACTGGATCCTGGCAAAGAGAATGCAAGGGATACCAATTTTGGAGCAAAGCAAACGAGAAAGGGTACTTCTCAATCAACAACGTACGCAGTGGGGATTACAATCTCTATGCATGGGTTCCAGGTTTCATTGGAGACTATTGGAGCAATGTTCTCCTCACCATAACACCAGGTTGTAAAATTGAAGTTGGAGAGGTGATTTACGAGGCTCCAAGAGATGGACCAACACTATGGGAGATAGGCATTCCAGATCGTTCTGCTGCTGAATTCTATGTACCTGATCCCAATCCCAACTACATCAACAAGCTTTTTCTCCATCATCTAGACAAGTATAGGCAATATGGGTTGTGGGAAAGGTATGCAGAATTATACCCAACTCAAGATTTAATTTACACAGTGGGTGTAAGTGACTATACAAAAGATTGGTTTTTTGCACAGGTCACAAGGAAGAAAGAAGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTCGATGATACAGAGGCAAGTAAAATCTACAAGTTGCGATTGGCCCTTGCAAGTGCAAATGTGTCAGAATTACAGGTTAGAGTGAATGATCCAAAACAAGATCCTCCTCTGTTGACTACAGGGGTGTTTGGGAAGGACTTTGCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTATTCAACATTGATGTGCCTGGTTTTCTGCTAGAAAAAGGTGTCAACACTGTGTTCTTAACTCAGACTGTGGCTACTGGTCCCTTGGCAACCTTTCAGGGAATAATGTATGACTATATACGCCTAGAAGGTCCTAATCCTTCTTCTCCATAA 1944 0.4228 MASPAAVKLYMEDDQVVMDNGIVQVYLSNPGGFVTRIQYNGIDNLLETRNKSGDRGYWDVVWSVAGSTGTTGTFQRIVGESFRVIMENEEEVEISFTSKWEPSLEGERAPLNIDKRYVMLCNSSGFYSYTIFEHLQEWPAFNIPQIRTVYKLSKDKFHYMVASDNRQRFMPLPDDRLPGRGEVLVPPEAVLLVNPLEPEFKGEVDDKYQYSSENKDLNVHGWISSESQTDPFIGFWVIIPSNEFRSGGPLKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLEGDDPLLLWEDAKYKTNAEVQSWPYDFPASEDFQKSSQRGSVCGTLLVKDRFLSDEKIIAEGAYIGLAPPGETGSWQRECKGYQFWSKANEKGYFSINNVRSGDYNLYAWVPGFIGDYWSNVLLTITPGCKIEVGEVIYEAPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLFLHHLDKYRQYGLWERYAELYPTQDLIYTVGVSDYTKDWFFAQVTRKKEDGSYQGTTWQIKFNLDDTEASKIYKLRLALASANVSELQVRVNDPKQDPPLLTTGVFGKDFAIARHGIHGLYWLFNIDVPGFLLEKGVNTVFLTQTVATGPLATFQGIMYDYIRLEGPNPSSP* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1901 647 CDD RGL4_N 15 306 - -
Pvu8g1901 647 Gene3D - 6 279 IPR014718 GO:0030246
Pvu8g1901 647 CDD RGL4_C 450 640 - -
Pvu8g1901 647 Gene3D - 336 435 - -
Pvu8g1901 647 Gene3D - 446 640 - -
Pvu8g1901 647 PANTHER LG27/30-LIKE GENE 5 645 - -
Pvu8g1901 647 SUPERFAMILY Starch-binding domain-like 338 431 IPR013784 GO:0030246
Pvu8g1901 647 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 5 645 - -
Pvu8g1901 647 Pfam Polysaccharide lyase family 4, domain III 448 639 IPR029411 -
Pvu8g1901 647 Pfam Polysaccharide lyase family 4, domain II 362 434 IPR029413 -
Pvu8g1901 647 SUPERFAMILY Galactose-binding domain-like 445 640 IPR008979 -
Pvu8g1901 647 CDD RGL4_M 339 436 IPR029413 -
Pvu8g1901 647 Pfam Rhamnogalacturonate lyase family 8 204 IPR010325 -
Pvu8g1901 647 SUPERFAMILY Galactose mutarotase-like 13 298 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1901 Pvu-Chr8 48449160 48458576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1901 7 643 Polysaccharide Lyase AT1G09890 61.719 0.0 826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1901 K18195 - gmx:100815677 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1901 8 48449160 48458576 Pvu8g1901 8 48449160 48458576 ECH