Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1895 ATGGACCCACCTGCAATGTACGGACACTCCCAGCCCCTGAACATGCCTCCGCAGATCTCCACCGCCGAAAGCGACGATGGCTCCGGCCCCGACCCCGCCCTCGACGCCCACCACCACATTCACTACGAAACTCACGCGCTCGAAGACGGTGCAACCGGTGCCATGGTCGTCGTTGAGGATGTCACTTCGGATGCGGTCTATGTCTCCGGCGGTGGAGGGCCCGAAGAGTCTAGCCAGCTTACGCTGTCGTTTCGTGGCCAAGTTTACGTCTTCGATGCCGTTACGCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATGTGAACTCTCTTCTAGTGGTTCGCCATGTGTGGATGTGGTGCCTCAACAGAATCAGAGGGGTTCAATGGAATATCCTGCAAGATGTAGTCTACCACAGCGAGCTGCCTCGTTAGATAGGTTCAGGCAGAAGAGGAAAGAGCGATGCTTTGATAAAAAAGTGAGATATAGTGTACGGCAAGAAGTTGCGCTCAGGATGCACCGTAATAAGGGGCAATTCACTTCTTCTAAGAAACAAGATGGAGCTAATAGTTATGGTACAGACCAAGATTCAGGACAGGATGATTGTCAATTAGAAACCTCATGCACACATTGTGGCATTAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCGTCTGGTCCAAGGTCACTATGCAATGCTTGTGGGCTTTTTTGGGCAAACAGGGGTGCTTTGAGAGACCTTTCCAAGAGAAATCATGAACACTCTCTTGCACCAGTTGAGCAGGTTGATGAAGGTAACGACTCAGATTGTCGAACTGCCGCCAACCCTGCACATAACAATCTCGCTCACGCCGCATACTCAGAGCATGATCATCCTGCTTTGGTAGCTGATCGTAAAGTTTTCCAGTCCCAGAAAATGCTGGAGTAG 936 0.5128 MDPPAMYGHSQPLNMPPQISTAESDDGSGPDPALDAHHHIHYETHALEDGATGAMVVVEDVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSSGSPCVDVVPQQNQRGSMEYPARCSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSYGTDQDSGQDDCQLETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNHEHSLAPVEQVDEGNDSDCRTAANPAHNNLAHAAYSEHDHPALVADRKVFQSQKMLE* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1895 311 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Pvu8g1895 311 PANTHER GATA TRANSCRIPTION FACTOR 28 6 277 IPR045280 GO:0006355
Pvu8g1895 311 PANTHER GATA TRANSCRIPTION FACTOR 25 6 277 - -
Pvu8g1895 311 ProSitePatterns GATA-type zinc finger domain. 210 237 IPR000679 GO:0006355|GO:0043565
Pvu8g1895 311 SMART GATA_3 204 257 IPR000679 GO:0006355|GO:0043565
Pvu8g1895 311 MobiDBLite consensus disorder prediction 183 202 - -
Pvu8g1895 311 Pfam GATA zinc finger 210 245 IPR000679 GO:0006355|GO:0043565
Pvu8g1895 311 SMART tify_2 73 108 IPR010399 -
Pvu8g1895 311 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 258 - -
Pvu8g1895 311 CDD ZnF_GATA 209 254 IPR000679 GO:0006355|GO:0043565
Pvu8g1895 311 Pfam tify domain 74 107 IPR010399 -
Pvu8g1895 311 MobiDBLite consensus disorder prediction 1 36 - -
Pvu8g1895 311 Pfam CCT motif 142 184 IPR010402 GO:0005515
Pvu8g1895 311 ProSiteProfiles GATA-type zinc finger domain profile. 209 253 IPR000679 GO:0006355|GO:0043565
Pvu8g1895 311 Gene3D - 205 256 IPR013088 GO:0006355|GO:0008270
Pvu8g1895 311 ProSiteProfiles CCT domain profile. 142 184 IPR010402 GO:0005515
Pvu8g1895 311 MobiDBLite consensus disorder prediction 175 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1895 Pvu-Chr8 48338884 48343489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1895 74 299 Tify Gene Family AT4G24470 63.158 7.34e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu8g1895 CCT 2.4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1895 - - pvu:PHAVU_008G182900g 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1895 8 48338884 48343489 Pvu8g1895 8 48338884 48343489 ECH
Pvu8g1895 8 48338884 48343489 Pvu9g0366 9 7520971 7525251 PCT