Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1887 ATGGCTAACAAACATGGCAAGGTTAAGGTTCCTTTCAGCGAGGAAAACGCTGCTTCTCTACTGCAAAGATACGATGCACGAACTCTTTTGACGTTGCTTCAGGAATTGGCCAATTATCCGCATTCTAAGTTTAACTGGAATGATTTGGTAGCAAAAACTTCAACAGGAATTTCTAACGCTAGAGAGTATCAGATGCTGTGGCGGCATTTGGCGTATGGACAGTCCATGGAAAATTTGGATCACGATGCTCAACCTTTGGATGATGACAGTGACTTGGAGGGTGAACGAGAAGCATTACCCCGCTTAAAGAGGGAAACTGCAACAGAAGCTGCAGCATTTGTTCAGGTAATCATTGCATCTTTTAAGCTGAGTGAATCCACTCCTACTAGCTCCGTGATTCAAGCTCCATTGATTATAAATGCTCCAAAGTGTGACTCATCTAACAAAGAAAGTTCGAGGACGCAAGATACAGACATTATTTTTCCAGTAACAGTCAAGAGAAAGACACTTCCAAATGCATCATCAACAAGAGTTGTGGAAGCCAGTGGTTCAGTTAGTGGCAACACATCCATTAAAAAGAAAAGAGAACCATGGTCAGAGCAAGAGGACATGCAATTACGAGATGCTGTTCAGAGGTGGGGTGAAGGTAATTGGGCAAGTATGATTAGAAGAGACGACTTTCCTATCAACAGGAGCACCTCACAGTTATCTAAGAGGTGGAGCACATTACGAAAGAGAGAAGGCGACATCAATTGA 756 0.4286 MANKHGKVKVPFSEENAASLLQRYDARTLLTLLQELANYPHSKFNWNDLVAKTSTGISNAREYQMLWRHLAYGQSMENLDHDAQPLDDDSDLEGEREALPRLKRETATEAAAFVQVIIASFKLSESTPTSSVIQAPLIINAPKCDSSNKESSRTQDTDIIFPVTVKRKTLPNASSTRVVEASGSVSGNTSIKKKREPWSEQEDMQLRDAVQRWGEGNWASMIRRDDFPINRSTSQLSKRWSTLRKREGDIN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1887 251 CDD SANT_TRF 197 245 - -
Pvu8g1887 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 248 IPR017930 -
Pvu8g1887 251 ProSiteProfiles Myb-like domain profile. 190 244 IPR001005 -
Pvu8g1887 251 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 251 - -
Pvu8g1887 251 SMART sant 194 246 IPR001005 -
Pvu8g1887 251 Pfam Myb-like DNA-binding domain 195 243 IPR001005 -
Pvu8g1887 251 Gene3D - 188 249 - -
Pvu8g1887 251 MobiDBLite consensus disorder prediction 174 203 - -
Pvu8g1887 251 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 251 - -
Pvu8g1887 251 MobiDBLite consensus disorder prediction 174 192 - -
Pvu8g1887 251 SUPERFAMILY Homeodomain-like 192 245 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1887 Pvu-Chr8 48081325 48091722 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu8g1887 Myb_DNA-binding 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1887 - - gmx:100819057 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1887 8 48081325 48091722 Pvu8g1887 8 48081325 48091722 ECH
Pvu8g1887 8 48081325 48091722 Pvu9g0376 9 7671989 7680380 PCT