Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1881 ATGCTTCCCTTTCGGAGATTCTACGGGTTCCAGAGTTGGCTAGACCACGACTCTACCCACCTCCCCAACTCGTTGATTAAAAGGGCAGTGGAGTTTGACGGCGCCAGATCAAAAACGGAGCGGAAATCAACTGAAGCATGCAAGAGTCACAGGGAAGCTGAGAGGAGACGCAGGCAGAGAATCAACTCCCACCTCTCCACCTTACGTTCCCTCCTTCCTAACGCGGCCAAGTCGGATAAAGCGTCGTTGCTGGCTGAAGTTGTTGAACACGTGAAACGGTTAAGGAAGCAGGCCAATGACGTGGCGTGCGTGGACGGCGACGAACCGGGGGCGGTTCAGTCTGAGGCGTGGCCGCTTCCTGGGGAGTGCGATGAGGCGACGGTGAGTTTGTGCGAGGGGGAGGCGCGGCGGGTGAAGGCGACGGTGTGCTGTGAGGACCGGGCCGGTCTGAACCGGGACGTGACATGGGCAATCCGGTCGGTTCGGGCAAAACCGATTCGAGCGGAAATGATGACGGTTGGAGGAAGGACTAAGAGTGTGGTGGTGGTGGAGTGGGGTGAAGAGGAGGTGGAGGAGGGAAGAGAAGTTGGGGCGCTGGAACGGGCTTTGAAGGCCGTAGTAGAGAATCGGGCTTTGGTGGGCTTTGGAATGGGCCCTGTTGTTTTGGGCCAGAAACGGGGTAGGGATTCTTGCGGCTCGCCTAGTTATTGTTGA 714 0.5798 MLPFRRFYGFQSWLDHDSTHLPNSLIKRAVEFDGARSKTERKSTEACKSHREAERRRRQRINSHLSTLRSLLPNAAKSDKASLLAEVVEHVKRLRKQANDVACVDGDEPGAVQSEAWPLPGECDEATVSLCEGEARRVKATVCCEDRAGLNRDVTWAIRSVRAKPIRAEMMTVGGRTKSVVVVEWGEEEVEEGREVGALERALKAVVENRALVGFGMGPVVLGQKRGRDSCGSPSYC* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1881 237 Gene3D - 39 102 IPR036638 GO:0046983
Pvu8g1881 237 PANTHER OS09G0463900 PROTEIN 27 229 - -
Pvu8g1881 237 Pfam Helix-loop-helix DNA-binding domain 47 94 IPR011598 GO:0046983
Pvu8g1881 237 SMART finulus 51 100 IPR011598 GO:0046983
Pvu8g1881 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Pvu8g1881 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 100 IPR036638 GO:0046983
Pvu8g1881 237 PANTHER TRANSCRIPTION FACTOR BHLH30 27 229 IPR045847 GO:0003700|GO:0006355
Pvu8g1881 237 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1881 Pvu-Chr8 47993773 47995182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1881 32 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 39.713 3.25e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu8g1881 HLH 8.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1881 - - gmx:100816394 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1881 8 47993773 47995182 Pvu8g1881 8 47993773 47995182 ECH