Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1876 ATGTTCTCAAAACTTCATCCGCAACACCAACCTTTTCAATTCTCCCGAGAATGTCAAACATCCGAGGACGATGACAGCCGGGGTAGCGGTGGACCCAACCTCGTGGCACAGAAGCCCGTCTCCACAGGCGATGGAGCTACAATTGAAGTAGTGCGGCGGCCCAGGGGCCGCCCTCCCGGCTCCAAAAACAAGCCCAAGCCGCCTCTTATTATTACCCGCGAGCCCGACCCCGCCATGAGCCCCTTCATTTTAGAAATCCCTGGCGGGAACGACGTCGTCGATGCCCTAACCCAGTTCAGCCGCAGAAAGAACACGGGCCTCTGTGTCCTCACCGGTTCGGGAACCGTTGGTAACGTCACTCTCCGCCAACCCTCCGTTGCTACCGTCGGCACCGTTACCTTCCACGGACGCTTCGACATCCTATCCATGTCCGCCACCTTCCTCCTCCACGCCCCCCCGCCGCCGGCCCCTCCCTCCACCTTCACCGTCTCGCTAGCCGGACCACAGGGGCAGATCGTCGGCGGACACGTCGCTGGAAGGCTGCTCGCTGCTGGGACGGTCTTCATCATCGCCGCGTCGTTCAACAACCCCTCCTTCCACCGGCTGTCGTCGGAGGACGACGCGCAGAATAACTGTGCGTCCGGCGGCGGCGGCAGAGATGCGCAGTCGCCGCTTGCCTCAGGTGGTGTCGCGGAGAGCGGACAACTTCCGGCGGAGCCGTGTATGTACAGCTGTCACCTCCCTTCGGATGTGATTTGGGCTCCAACGGCTAGACCACCTTTCTGA 786 0.6183 MFSKLHPQHQPFQFSRECQTSEDDDSRGSGGPNLVAQKPVSTGDGATIEVVRRPRGRPPGSKNKPKPPLIITREPDPAMSPFILEIPGGNDVVDALTQFSRRKNTGLCVLTGSGTVGNVTLRQPSVATVGTVTFHGRFDILSMSATFLLHAPPPPAPPSTFTVSLAGPQGQIVGGHVAGRLLAAGTVFIIAASFNNPSFHRLSSEDDAQNNCASGGGGRDAQSPLASGGVAESGQLPAEPCMYSCHLPSDVIWAPTARPPF* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1876 261 MobiDBLite consensus disorder prediction 205 231 - -
Pvu8g1876 261 CDD DUF296 81 194 IPR005175 -
Pvu8g1876 261 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 259 IPR014476 GO:0003680
Pvu8g1876 261 ProSiteProfiles PPC domain profile profile. 76 215 IPR005175 -
Pvu8g1876 261 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 206 - -
Pvu8g1876 261 MobiDBLite consensus disorder prediction 1 75 - -
Pvu8g1876 261 Gene3D - 80 212 - -
Pvu8g1876 261 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 196 IPR005175 -
Pvu8g1876 261 MobiDBLite consensus disorder prediction 1 17 - -
Pvu8g1876 261 PIRSF ESCAROLA 2 250 IPR014476 GO:0003680
Pvu8g1876 261 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 8 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1876 Pvu-Chr8 47882026 47882811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1876 42 260 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 63.519 7.86e-94 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1876 - - gmx:100811053 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1876 8 47882026 47882811 Pvu8g1876 8 47882026 47882811 ECH
Pvu8g1876 8 47882026 47882811 Pvu9g0451 9 8461349 8462913 PCT