Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1874 ATGGACTCTTACGCCACAAACACTCTGCAAGAAAGTCCAACAAATTTAAAGAAGGGGTTTCTCACTCCAACAATTGCCTACATCCTCTTCGGCATCATCTTCTTTAAGGGATTGGTATTTATGTACTTTCGAAGGCACTCCTCCTCATCGGATCCCCAGTTCGACGACCACTACAAGAAAAATCCAATTTATCTACGAAAGAAATCCTGTGCCTACATCCTCTTCGACATCATCTTCTTTATGGGATTGGTATTTATGTACTTCCGAAGGCACTGCTCCTCGTTGGATTATGAGTCTGGCGACATACACAGGCAACCGGCGTCGAAGTCTCCGACGGTGGTGGCGGAGACAGCTGGGGAGTGCACTAATATGTTTCGAGGAGAAATGACTGGAGAACCAAGTGACTGCCCCGTGTGCCGGTACTCTGAGAGAAGTGAAGAGGTGGAGTTGGTGACGTGGGTTTGGTATTTAAATAGATCCGAAGGCACTCCTCCTCGTTGGATCCTGAGTCTGGCGACATCCACGGGCAACCGGTGTCGAATTCTCCGACGACGGCTGAAGAGTGCACTAATATGTTTCGTGGAGGTGGGAGAGGGAGAGACGGTGAAGATTATTGTCTACTGCAATCACATATTCCACGCGAATTGCATTGAGAAATGGTTGGAGTACCAAGTGACTACCCCGTGTGCCGGTCCCGTGTGCCGGTCCCGTGTGCCGTGGAATAGGTATTTATGTAGATCCAAAGGCACTCCTCCTCGTTGGATCCTGAATCTGGCGACATCCACGGGCAACCGGTGTCGAAGTCTTCGATGGTAG 816 0.4975 MDSYATNTLQESPTNLKKGFLTPTIAYILFGIIFFKGLVFMYFRRHSSSSDPQFDDHYKKNPIYLRKKSCAYILFDIIFFMGLVFMYFRRHCSSLDYESGDIHRQPASKSPTVVAETAGECTNMFRGEMTGEPSDCPVCRYSERSEEVELVTWVWYLNRSEGTPPRWILSLATSTGNRCRILRRRLKSALICFVEVGEGETVKIIVYCNHIFHANCIEKWLEYQVTTPCAGPVCRSRVPWNRYLCRSKGTPPRWILNLATSTGNRCRSLRW* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1874 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 238 IPR013083 -
Pvu8g1874 271 Pfam RING-H2 zinc finger domain 178 228 IPR024766 GO:0008270
Pvu8g1874 271 SUPERFAMILY RING/U-box 191 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1874 Pvu-Chr8 47744567 47749043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1874 183 236 C3H Transcription Factor Family AT2G27940 42.593 2.05e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1874 - K19041 pvu:PHAVU_008G180900g 576.63