Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1857 ATGGAATTCGACGACCAAGAGGAGCAGGAGGAGGAAATGGGGATGCCGGAGCCGCCGGTACCCGCGCCGGTGGCAAGTTACGACTCGCTTGGGAACTCGGCGGCGCGCTCCAAAGTTGGAGGCGAGGGACGGAAGGGCGCGTTCGGCGCCGGGGCGGTACGGTACCGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCCGTTGACGGCTGCTGCGAGTTCATGCCGGCCGGAGAGGACGGCACTCTGGAGGCCGTGATTTGCGCCGCCTGCAACTGCCACCGGAATTTTCACCGCAAGGAGATCGACGGCGAGATGACCTCCTTCCACCACCGCGCACAGCCGCCGCCACCGCCGCTTCACCACCACCATCAATTCTCCCCGTACTACCACCACCGAGTCCCGCAGCACCCCGCCGCCGCTGGCTACCTCCACCACCACCTAGCCACGCCTCCAATGGCGCAGCACCGCCCGCTGGCCCTCCCGGCAGCGGCCTCCGGCGGTGGACTCAGCCGCGAAGACGAAGACATCTCGAATCCGAGCAGCAGTGGGGGAGGCGGCGGAGGTGGCGGCGGCGGGGGATCCAAAAAACGGTTCCGAACGAAGTTCACGCAGGAACAGAAGGATAAGATGCTGGCATTCGCGGAACAGCTAGGGTGGAGAATCCAGAAGCACGATGAATCTGCGGTGGAACAGTTCTGTGCTGAGACCAATGTGGAGCGAAAAGTTCTGAAAGTTTGGATGCACAATAACAAGAACACTCTCGTTTGTCTGTAA 786 0.6298 MEFDDQEEQEEEMGMPEPPVPAPVASYDSLGNSAARSKVGGEGRKGAFGAGAVRYRECQKNHAVSFGGHAVDGCCEFMPAGEDGTLEAVICAACNCHRNFHRKEIDGEMTSFHHRAQPPPPPLHHHHQFSPYYHHRVPQHPAAAGYLHHHLATPPMAQHRPLALPAAASGGGLSREDEDISNPSSSGGGGGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCAETNVERKVLKVWMHNNKNTLVCL* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1857 261 SUPERFAMILY Homeodomain-like 185 257 IPR009057 -
Pvu8g1857 261 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 199 256 IPR006455 -
Pvu8g1857 261 Pfam ZF-HD protein dimerisation region 53 105 IPR006456 -
Pvu8g1857 261 MobiDBLite consensus disorder prediction 166 201 - -
Pvu8g1857 261 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Pvu8g1857 261 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 258 - -
Pvu8g1857 261 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Pvu8g1857 261 MobiDBLite consensus disorder prediction 1 39 - -
Pvu8g1857 261 Gene3D - 184 259 - -
Pvu8g1857 261 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 43 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1857 Pvu-Chr8 47313545 47315572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1857 1 258 ZF-HD Transcription Factor Family AT4G24660 52.326 2.92e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu8g1857 ZF-HD_dimer 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1857 - - gmx:100776421 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1857 8 47313545 47315572 Pvu8g1857 8 47313545 47315572 ECH
Pvu8g1857 8 47313545 47315572 Pvu9g0395 9 7820323 7822453 PCT