Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1843 ATGGGCATCCACATGGAATGCCCTGCACCTCCACCTGCACCGCGGTTCATGAATCTGGATCATGATCGTGCATTTTTTTTCCTTCTCATCCTCCTTCTCGTGCCGCCGGTCACGGCACAGTTTCAAAATCCGCCTCCATCACCGCCGCAGTTGGATCCTTTCACGAGACTGAGATTCGACAAGACCATGGCTGCGGTTCTGGTGATCCTCGTAGTGGTCTTCTTTGCGTTGGGATTCGTGTCCATCTACACGCGCCAATGCGCTGAGCGGCGGATCAGAGGGAGGCTCGACCTGGCCGTGGCGATCGCCGGCGGGATGGACCGGCGGCAGCATCTCGGGCTCGACAGGGCGATAGTGGACACGTTTCCGACGTTCGTGTACTCCGAGGTTAAAGCCCTGAAGATCGGGAGGGCCACGCTGGAATGCGCTGTTTGTCTCAACGAGTTCCGCGACGACGAAACGCTGCGCTTGATCCCCAAATGCTGCCACGTGTTCCACCCCGATTGCATCGATGCATGGTTGGTGAATCATTCCACTTGTCCCGTTTGCCGCGCCAACCTGGCGCCGAAGCCCGAGGACGCGCCTCCTTCCGTTGAGATTTACATTCCGGATTCGGCCCGGCCCAATGGGCCCAACGCAGAACCCGATTATGATCCCAATTACATCAACCCGGTCGATGAAGGTGAAGAAGGTGAACGAAACAGAATAATTACGGAGCCTCTTAGTTTAGATGATCCGAACCGGACCCATCCAGTTCGGTCTAGATCGACCGGTTTTGGAACTTCAAGGCTGTTTCCGCGCTCTCATTCAACGGGTCATTCTCTGGTTCGACCGGGAGAGGACTGCGAGCGGTTCACACTGCGGTTGCCGGAGGATGTGCGGAACCGGCTCATGAGTTTTAGGATGCTGAACCGGACCAAGAGTTGTGGGGTGACGTGGCAGCGGCAGAGTAGTGGAAGGAGGGATTACAGAACGAGGAGTGTGGGGAGAAGCTATCTGCAATACGAGCGGTTCGGTGGGGAAGGCCGGTTGGACCGGTGGGGGTTCATGTGGACCCCACCGTTTTGGGGTAGGACCGGTTCGGAGAAATCCCCAAAGTCAACGAGGATGAAGGATGAAGTGGACGTGGGAGAACGTTCCTCTGATATTTTGTTTTGCAGAGATTGA 1167 0.5647 MGIHMECPAPPPAPRFMNLDHDRAFFFLLILLLVPPVTAQFQNPPPSPPQLDPFTRLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRIRGRLDLAVAIAGGMDRRQHLGLDRAIVDTFPTFVYSEVKALKIGRATLECAVCLNEFRDDETLRLIPKCCHVFHPDCIDAWLVNHSTCPVCRANLAPKPEDAPPSVEIYIPDSARPNGPNAEPDYDPNYINPVDEGEEGERNRIITEPLSLDDPNRTHPVRSRSTGFGTSRLFPRSHSTGHSLVRPGEDCERFTLRLPEDVRNRLMSFRMLNRTKSCGVTWQRQSSGRRDYRTRSVGRSYLQYERFGGEGRLDRWGFMWTPPFWGRTGSEKSPKSTRMKDEVDVGERSSDILFCRD* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1843 388 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Pvu8g1843 388 PANTHER RING-H2 FINGER PROTEIN ATL11 26 316 - -
Pvu8g1843 388 SUPERFAMILY RING/U-box 122 198 - -
Pvu8g1843 388 MobiDBLite consensus disorder prediction 359 381 - -
Pvu8g1843 388 PANTHER RING FINGER DOMAIN-CONTAINING 26 316 - -
Pvu8g1843 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 190 IPR013083 -
Pvu8g1843 388 MobiDBLite consensus disorder prediction 364 381 - -
Pvu8g1843 388 Pfam Ring finger domain 141 184 IPR001841 -
Pvu8g1843 388 SMART ring_2 142 183 IPR001841 -
Pvu8g1843 388 MobiDBLite consensus disorder prediction 252 269 - -
Pvu8g1843 388 CDD RING-H2_PA-TM-RING 141 184 - -
Pvu8g1843 388 MobiDBLite consensus disorder prediction 241 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1843 Pvu-Chr8 47011665 47013521 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1843 25 379 Rapid Response to Elicitors AT3G05200 41.270 1.10e-68 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1843 K10664 - gmx:100815982 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1843 8 47011665 47013521 Pvu8g1843 8 47011665 47013521 ECH
Pvu8g1843 8 47011665 47013521 Pvu9g0351 9 7335214 7336979 PCT