Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1841 ATGAGCATGCAAAAAGAGAGCACTCTCATTAGACTCCTCATTTTCGACCAAGGTCATGCATGGCTCGCTCTTTTGCACCTTCTCATTCACATGTCACCGCCAGTAACCGGTCAATCGGTAACTCCGACGATAGAACCCGACGACAACAATTCCGTGATCGCCATCATGGTCATCATCGCCGTAATGTTCCTCATCTCAGCCTTCATCTCTCTCTACTCTCGCAAATGCTCCGACCGACAAGCACAGACACGTGGCATTCTCGACCTCGCCGCATCCACAGGCGCAACCGGTAATCCGTCGTCGCAAAGCGAACCCAACGGTCTCAGCCAATCCACCATAGAAACCTTCCCCACATTCCTCTACTCCGACGTGAAGGGTTTCAAAATCGGAAAAGAGACGCTAGCATGCGCCGTGTGCTTGAGCGAGTTCCAAGACCACGAAACCCTTCGCGTGATCCCCAAATGTTGCCACGTGTACCACCCTAATTGCATCGACCTGTGGTTAACGTCTCACTCCACTTGTCCAGTGTGTCGCGCCAACCTCGTTCCACAACCTGAAGATATGAACATGAACACGAACATGCTACCAATGTTGTCCATTCAGGTACCCGATGAAGATGAAGATGAAGATCAAAGTGGTGAACATGAACAAGAGAGTGTTATCAGTGAGGAAGGAAAAAGAGGCCATGATGACGTGGACTCGCCGAAGGTGGATATGCTTCGGAGGATTCACACATTGCATCAGAGCCGTCCATCAAGGTCGAGGTCCACGGGGTTCTTATCCACTCTCTTGTTTCCGCGATCGAACTCAATGGGGCAATTGGCGCAGCCAGGGGAGAACTATGAGAGGTTTACGCTAAGGTTACCGGAGGAGGTACAAAGCCAGATGGCGAACTTCAGGCTTAAGCGTGCGAATAGTTGTGCATGCTTTACGAGAATGAGCAGTGGCACGTGGGGGTATAGAACGAGAAGCGTGGGGAGTGGACGTGGGAGAGGGTGTGTGCAGTATGAGAGGTTCAATGGTGAGGAACAATGGGGTTTCTCTTTGACACCACCGAGCCTCGTTAAAAACGATTCGAATAGATCCTCCAGAAAATCATTGGTTCAATGTTCAGGTGTGGTGTTGGATTATAATCCTAATGAATGA 1146 0.5026 MSMQKESTLIRLLIFDQGHAWLALLHLLIHMSPPVTGQSVTPTIEPDDNNSVIAIMVIIAVMFLISAFISLYSRKCSDRQAQTRGILDLAASTGATGNPSSQSEPNGLSQSTIETFPTFLYSDVKGFKIGKETLACAVCLSEFQDHETLRVIPKCCHVYHPNCIDLWLTSHSTCPVCRANLVPQPEDMNMNTNMLPMLSIQVPDEDEDEDQSGEHEQESVISEEGKRGHDDVDSPKVDMLRRIHTLHQSRPSRSRSTGFLSTLLFPRSNSMGQLAQPGENYERFTLRLPEEVQSQMANFRLKRANSCACFTRMSSGTWGYRTRSVGSGRGRGCVQYERFNGEEQWGFSLTPPSLVKNDSNRSSRKSLVQCSGVVLDYNPNE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1841 381 MobiDBLite consensus disorder prediction 215 236 - -
Pvu8g1841 381 PANTHER RING FINGER DOMAIN-CONTAINING 1 326 - -
Pvu8g1841 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 184 IPR013083 -
Pvu8g1841 381 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Pvu8g1841 381 CDD RING-H2_EL5_like 136 178 - -
Pvu8g1841 381 MobiDBLite consensus disorder prediction 204 236 - -
Pvu8g1841 381 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 326 - -
Pvu8g1841 381 SUPERFAMILY RING/U-box 130 190 - -
Pvu8g1841 381 SMART ring_2 136 177 IPR001841 -
Pvu8g1841 381 Pfam Ring finger domain 135 178 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1841 Pvu-Chr8 46832124 46833616 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1841 51 364 Rapid Response to Elicitors AT3G05200 35.938 9.82e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1841 K10664 - gmx:100814384 518.85