Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1840 ATGGCCCTAGAGGCCGTGGTTTTCCCTCAAGATCCATTCACTTATCCTTGCAACAAAGACTACTTCTACTCGCTATTACAAAACAATTTCCAACAAGTAGAAAACAAAGCCTTTGTAGGAATCATCACCAATAACATAGACCACACTCTGCATGCAAATTGGGATTCTTCTTCCCCTTCAGCTTTGCAAAATGTCAAAGACCAATGGGACTCACACTCCTCCCCTGAACCCTGCACCGTCGATCAATCCCTCCCCGCCGCTTTTCCTCCTCCTCCCTCCTCCACCGAGCCCACCACCGGCCGTCGCAAACGCCGCCGCACCAAAAGCACCAAAAACAAAGAGGAGATCGAGAATCAAAGAATGACCCACATTGCAGTTGAACGCAATCGAAGGAAACAGATGAACGAGTACCTCGCAGTTCTAAGATCCTTGATGCCACCGTCTTATGTCCAAAGGGGTGATCAAGCATCTATTATTGGTGGCGCCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCTTGAAAGGGCAGCAGAGAACAAAGGAAAATGTTGGTGGCTTTGACTCATCACCCTTTGCTGAGTTCTTCATGTTCCCTCAGTACTCCACACGTGCGACACAGAATAGCAGAGGCTACCCTAGCACGTGCGAAGCACGGAACCATTCATGGGCCGTGGCAGACATAGAAGTGACCCTGGTGGATGGTCATGCCAACATAAAGATACTCACCAAGAAACTACCAGGCTTGCTTCTGAAGATGGTTGTTGGCCTTCAAACTCTTGCCTTCACCATTCTCCACCTTAATGTTACCACTGTTGACGATATGGTCCTTACCTCGGTTAGTGTCAAGATAGAGGAAGGGTGTGAGGCGAAGACAGTGGACGAAATTGCAGGTGCTGTGCATGAATTATCCCAGAGGATCCAGGAGGAAGCTGTTTTGAGCTGA 951 0.489 MALEAVVFPQDPFTYPCNKDYFYSLLQNNFQQVENKAFVGIITNNIDHTLHANWDSSSPSALQNVKDQWDSHSSPEPCTVDQSLPAAFPPPPSSTEPTTGRRKRRRTKSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCLKGQQRTKENVGGFDSSPFAEFFMFPQYSTRATQNSRGYPSTCEARNHSWAVADIEVTLVDGHANIKILTKKLPGLLLKMVVGLQTLAFTILHLNVTTVDDMVLTSVSVKIEEGCEAKTVDEIAGAVHELSQRIQEEAVLS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1840 316 MobiDBLite consensus disorder prediction 57 80 - -
Pvu8g1840 316 PANTHER MAX DIMERIZATION, MAD 1 315 - -
Pvu8g1840 316 Coils Coil 166 186 - -
Pvu8g1840 316 CDD bHLH_AtFAMA_like 121 184 - -
Pvu8g1840 316 Gene3D - 109 185 IPR036638 GO:0046983
Pvu8g1840 316 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 315 - -
Pvu8g1840 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 181 IPR036638 GO:0046983
Pvu8g1840 316 SMART finulus 124 175 IPR011598 GO:0046983
Pvu8g1840 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 169 IPR011598 GO:0046983
Pvu8g1840 316 MobiDBLite consensus disorder prediction 57 116 - -
Pvu8g1840 316 Pfam Helix-loop-helix DNA-binding domain 119 170 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1840 Pvu-Chr8 46772730 46775457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1840 1 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.734 4.30e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu8g1840 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1840 - - gmx:100797856 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1840 8 46772730 46775457 Pvu8g1840 8 46772730 46775457 ECH
Pvu8g1840 8 46772730 46775457 Pvu9g0350 9 7305815 7307338 PCT