Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1839 ATGGCCAACAAACTCAGAAAACTCTTCCCAGATGAAACAACAACCACAAACCAAACCCAAACACAAGATTGCTATGGCTTATGTGACCCTGCATGCCCTTACAACTGTTACTCTAACCAAGACTACTTCTTCTCTCCACCACCACCATCTATTTTACACTCAACACAAGTTAACCACATACCCTCCTATTTGATCATCCTCGGAACTCTCTTCATGGTCATTTTTGTTGTTATTGGTTTCTACGTGATCAAAGTGAAGTGCTATGCTGCATGGTGTGGGTGGAGGCTCAACGGATCCGTTCCTTCTCAATCAGACACCACCACTGAGGAGTTTCTCAACGAGAACCAAGTTGACCACCCCGTGTGGCTCATTGCCACGGTGGGGTTGCAACAATCCGTCATAAACTCCATCACGGTGTGCAAGTACAAAAGAAACGAAGGTTTGGTTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAATTCCAAGAGGAAGAGACCTTGCGACTCTTGCCAAAGTGCAACCATGCTTTTCACATCCCTTGTATTGACACTTGGTTGAGATCACACATCAATTGTCCACTTTGTCGTGCCGGTATTGTCTCTAACAGTGTCACTTCTGAAGCACCCGTGTCGAATTTGGAGCAAGAGAATGCAAATTTGGGAAGAAATCAAGAGACCCTTATGGAGAATTCAAGGAATGAAGGCTTGTTAAACGGCAACACGGTTGCAGGGGAATCAAGTGAAGCACTAGAGTTGGTTGATGAATCAAATTCTAAGGATCGGGTGCATGATCAAACTCAGAACCATCACGTTCTGGATATCGAGATTCACACAGAAACGGGGTCTGTTTCAACCGCAGAATCTGAAAGCCATCATGTTGGTGATGATCATAAACATGATGAAATACACTTGCAACCTGTTAATCAATGGAAGAAAGAGCAAGATGGTGATTACTACCAAAACACGTGTAAAACAATGCGTCGTTGTTCCTCTATTGAAGAGTGTTTGCATTTAAGCCCGGTATCCATGAAAAGATCATTCTCCTGCAATGGAAGGATTCTAACTTCCAGAGGTTGCATGACTTTAAACGCTATGCTCCATTCATCCCTACTAGAATTTTCAATCTGTTAG 1131 0.4359 MANKLRKLFPDETTTTNQTQTQDCYGLCDPACPYNCYSNQDYFFSPPPPSILHSTQVNHIPSYLIILGTLFMVIFVVIGFYVIKVKCYAAWCGWRLNGSVPSQSDTTTEEFLNENQVDHPVWLIATVGLQQSVINSITVCKYKRNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHIPCIDTWLRSHINCPLCRAGIVSNSVTSEAPVSNLEQENANLGRNQETLMENSRNEGLLNGNTVAGESSEALELVDESNSKDRVHDQTQNHHVLDIEIHTETGSVSTAESESHHVGDDHKHDEIHLQPVNQWKKEQDGDYYQNTCKTMRRCSSIEECLHLSPVSMKRSFSCNGRILTSRGCMTLNAMLHSSLLEFSIC* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1839 376 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Pvu8g1839 376 SUPERFAMILY RING/U-box 145 202 - -
Pvu8g1839 376 Coils Coil 210 230 - -
Pvu8g1839 376 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 360 IPR044675 -
Pvu8g1839 376 Pfam Ring finger domain 153 196 IPR001841 -
Pvu8g1839 376 SMART ring_2 154 195 IPR001841 -
Pvu8g1839 376 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 360 - -
Pvu8g1839 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Pvu8g1839 376 CDD RING-H2_PA-TM-RING 153 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1839 Pvu-Chr8 46757806 46759573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1839 4 206 C3H Transcription Factor Family AT1G72220 46.753 8.93e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1839 - - gmx:100805705 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1839 8 46757806 46759573 Pvu8g1839 8 46757806 46759573 ECH