Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1813 ATGGTCATGTGGAGAGAGATGGTGTTATTGGTGATGTTCTTGCTGTTTGTAGTCCAACAAATATGTGCTACGCATGAGCGAGAGAAAACTATGGATTGCCCCACTTCTTCTTGCGGGAAAATCACAAACATAAGTCGGCCATTCAGATTGAAACGTGATCCAATACACTGCGGCGACAGCAGGTACGAACTGGATTGTGAAAATAATGTTACCGTGCTGTATTTGTTCTCGGGAAAATATCATGTGCAGGCAATCAACTACCATAATTTCACAATCCGAGTGGTTGACCCGGGAGTTGAAGAACCAAGTTGCTCCTCCCTTCCTCGCTATTTCTTGTCTAAATCCAATTTCACTGATGCTTATCATGGTCATGCCGTGGCTCCATACCTAACCTCTCAATACCAAATCTCTGATGAATTGAGTAATTACGAGAAGAGTCTTTGGAAGCACATAATTTACTTGAATTGTAGCCATCCAGTGAGTGAGAAGAATAAGTACGTGAATGCTGCTCCGTGTGTGAAGTGGCAGTCGAAAGGCCACATTTATGCCATCGGTGGTGACATAACAGCAGCGGAACTTGAAGTTGGTTGTGGTGTAAAGCTGGTGTCTCCGACGTCTTGGTGGGGTTTGGACGAATCTTCCTACACTGATATGAACAGAGCGCTACTTTATGGATTTGAGATGTCGTGGTTGCAATTTGCCTGTGACGATCAATGTCAAGAGTCACCTTATGACGTGTGCTCTTTCAACACTTCCAGCCTTAACCTTCAATGCGCGCTCTTATGCCCAGATATATTTGGAATACGGCTAGTTCGGTGTGGTAGAGGGATATGGTCACAGCTGCTACCTTATCCAGCATATTTTTTGGAGAATGTTTTCTTCATACTGTTGGGCACAATACAAGGAAACCTAAGATTTGATGCAATTGACTACTTTGATATGATGGTGAACGGTTTCAAGGAAAAATTGGGTGAAGGAGGCTATGGCTCTGTGTTTAAGGGAAAGTTGTCTAGTGGATCTTGTGTGGCTATAAAAATGTTAAGTAAAACAAAAGGAAGAGGACATGACTTTATTAGTGAAGTTGCTACCATTGGAAGAATACATCATCAAAATGTAGTACAATTAATTGGATTTTGTGTTGAAGGTTCGAAACATGCTCTTGTTTATGAATTCATGTCCAATGGATCTCTTGATAAAATTATATTTTCTAAAGATAAAAGTATAGAATTTGGCTATGACAAAATATACAATATAGCAATTGGGGTAGCTCGTGGGATTGCTTATCTCCACCATGGATGTGAGATGCAAATTTTGCATTTTGATATAAAACCCCATAATATTCTACTTGATGATAAATTCATTCCAAAGGTCTCTGATTTTGGATTGGCAAAGTTATATCCGATAGATAATAGCATTGTCACCATGACAACAGTAGGAGGAACAATTGGATACATGGCTCCAGAATTGTTTTATAAAAATATTGGGAGAATATCCTATAAGTCTGATGTTTATAGTTTTGGAATGCTTTTAATGGAGATGGCAAGCAGGAGGAAAAACTTAAATTCCCATGTAGAGCATTCAAGCCAAATTTATTTTCCCTCTTGGATTTATGATTACATTAGAGAAGAGAAAGATATAGAAATGGAAGAAATGGGAGATTTCACAGAGGAGGAAAAGAAAATAGTAAAGAAGATGATCATAGTTGCATTTTGGTGTATACAAATGAATCCAGATGATCGTCCCTCCATGAACAAAGTAGTGGAAATGCTTGAAGGAGACATTGAAAAATTGGAAATCCCTCCAAATTTTTCTTTATATCCATATGATGCGACAGAAAACTCTAAACAAACAATAGCAACTGAATTTACTTGTTCTTCTAGTTATTCTTTGGAAATTGATTAA 1902 0.3843 MVMWREMVLLVMFLLFVVQQICATHEREKTMDCPTSSCGKITNISRPFRLKRDPIHCGDSRYELDCENNVTVLYLFSGKYHVQAINYHNFTIRVVDPGVEEPSCSSLPRYFLSKSNFTDAYHGHAVAPYLTSQYQISDELSNYEKSLWKHIIYLNCSHPVSEKNKYVNAAPCVKWQSKGHIYAIGGDITAAELEVGCGVKLVSPTSWWGLDESSYTDMNRALLYGFEMSWLQFACDDQCQESPYDVCSFNTSSLNLQCALLCPDIFGIRLVRCGRGIWSQLLPYPAYFLENVFFILLGTIQGNLRFDAIDYFDMMVNGFKEKLGEGGYGSVFKGKLSSGSCVAIKMLSKTKGRGHDFISEVATIGRIHHQNVVQLIGFCVEGSKHALVYEFMSNGSLDKIIFSKDKSIEFGYDKIYNIAIGVARGIAYLHHGCEMQILHFDIKPHNILLDDKFIPKVSDFGLAKLYPIDNSIVTMTTVGGTIGYMAPELFYKNIGRISYKSDVYSFGMLLMEMASRRKNLNSHVEHSSQIYFPSWIYDYIREEKDIEMEEMGDFTEEEKKIVKKMIIVAFWCIQMNPDDRPSMNKVVEMLEGDIEKLEIPPNFSLYPYDATENSKQTIATEFTCSSSYSLEID* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1813 633 ProSiteProfiles Protein kinase domain profile. 317 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g1813 633 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 290 617 - -
Pvu8g1813 633 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 9 300 - -
Pvu8g1813 633 Pfam Protein kinase domain 320 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g1813 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Pvu8g1813 633 PANTHER RUST RESISTANCE KINASE LR10-RELATED 9 300 IPR045874 GO:0004672
Pvu8g1813 633 PANTHER RUST RESISTANCE KINASE LR10-RELATED 290 617 IPR045874 GO:0004672
Pvu8g1813 633 Gene3D Phosphorylase Kinase; domain 1 301 391 - -
Pvu8g1813 633 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Pvu8g1813 633 Gene3D Transferase(Phosphotransferase) domain 1 392 599 - -
Pvu8g1813 633 SUPERFAMILY Protein kinase-like (PK-like) 316 591 IPR011009 -
Pvu8g1813 633 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Pvu8g1813 633 SMART serkin_6 317 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1813 Pvu-Chr8 46067082 46076918 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1813 11 606 Receptor kinase-like Gene Family AT5G38260 34.340 9.77e-103 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu8g1813 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1813 - - gmx:100305367 761.911