Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1809 ATGGTGAAGTACTCAAGGGAGCCAAACAATCCCACTAAGTCTTGCAAGGCTAGAGGTGCCGACCTTAGCGTTCATTTCAATAACACTAGGGAAACTTCATTTGCAATCAGGAAGTTGTCCCTGGTTAAGGCTAGAAGGTACTTGGAAGATGTTCTTGCCCACAAACAAGTCATTCCGTTTAGACGTTTCTGTCGCGATGTTGGAAGGATAGCCCAAGCAAAGAGTAGACACTCTAATGGCCAAGGAAGGTGGCCTGTCAAATCAGCAAAATTCATCCTTAATTTGCTTAAAAATGCCGAGAGCAATGCTGAAGTGAAAGGTTTGAATGTTGATGCGCTTTACATTTCCCATATCCAAGTCAATCAAGCGCAAAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCCCCGTGCCACATAGAATTAATATTCTCGGAAAAGGAAGAACCCGTCAGGAAGGAGCCCGAGACAAATTTGACAACAAGCAAGAAGTCCCAAGCTCTACGAAGTAGTGCCTCTTCTTAG 546 0.4432 MVKYSREPNNPTKSCKARGADLSVHFNNTRETSFAIRKLSLVKARRYLEDVLAHKQVIPFRRFCRDVGRIAQAKSRHSNGQGRWPVKSAKFILNLLKNAESNAEVKGLNVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELIFSEKEEPVRKEPETNLTTSKKSQALRSSASS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1809 181 MobiDBLite consensus disorder prediction 167 181 - -
Pvu8g1809 181 MobiDBLite consensus disorder prediction 154 181 - -
Pvu8g1809 181 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 153 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pvu8g1809 181 Pfam Ribosomal protein L22p/L17e 17 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pvu8g1809 181 PANTHER 60S RIBOSOMAL PROTEIN L17 1 181 IPR005721 GO:0003735|GO:0006412|GO:0015934
Pvu8g1809 181 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 181 - -
Pvu8g1809 181 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Pvu8g1809 181 CDD Ribosomal_L22 15 150 IPR001063 GO:0003735|GO:0005840|GO:0006412
Pvu8g1809 181 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1809 Pvu-Chr8 45964362 45964953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1809 1 174 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 81.034 1.83e-106 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1809 K02880 - gmx:100816536 333.183