Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1806 ATGAATCAAAACCAGCTGCAGCCCCTGCCTCTGCTTAGTAGCTTCCTAGGTTCATCTCCCCAAGAAGCTTTGCTACAAAACCAAAACCCTAAAGCATACCATGGTCAAGTTGAGGATGTCACTGTGGCCTTACACATAGGCCTCCCCAACAATTCAGGTGGCTCCACCAATAATCAAGGATTTGTGAATGCTACAACTCATGTTCCTAGCAACTACTGGATACCAACTCAAGAACAGATCCTCATAGGCTTTAGCCATTTCTCTTGTCCCGTCTGCCTCAAAACCTTCAATCGCTACAACAATCTTCAGATGCATATGTGGGGGCACGGGTCACAGTATCGCAGAGGACCAGACTCGCTGAAGCGAACCCATCCACGACCCTTGTTGGACATTCCCTGCTACTGTTGCTCGAGAGGGTGCAAGAACAACATCGACCACCCACGTGCGAAGCCTCTCAAGGACTTTCGCACGCTTCAAACGCACTTCAAGAGGAAGCATGGCGCCAAGCCCTTCACGTGCCGCAAGTGCGCCAAGCCTTTGGCCGTGAAAGGTGACTGGCGAACCCACGAGAAAAACTGCGGCAAACGCTGGCTCTGCATTTGTGGCTCCGACTTCAAACATAAGAGGTCTCTCAAAGATCATATCAGAGCCTTTGGCTTTGGTCACACCCCTTTCACTTCTTCTTCTGATGCCATGTAG 699 0.5036 MNQNQLQPLPLLSSFLGSSPQEALLQNQNPKAYHGQVEDVTVALHIGLPNNSGGSTNNQGFVNATTHVPSNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSRGCKNNIDHPRAKPLKDFRTLQTHFKRKHGAKPFTCRKCAKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHIRAFGFGHTPFTSSSDAM* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1806 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Pvu8g1806 232 Gene3D Classic Zinc Finger 86 109 - -
Pvu8g1806 232 SUPERFAMILY beta-beta-alpha zinc fingers 82 109 IPR036236 -
Pvu8g1806 232 Gene3D Classic Zinc Finger 149 223 - -
Pvu8g1806 232 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Pvu8g1806 232 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 5 227 - -
Pvu8g1806 232 PANTHER ZINC FINGER PROTEIN WIP2 5 227 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1806 Pvu-Chr8 45920629 45922057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1806 1 227 C2H2 Transcription Factor Family AT1G34790 57.831 7.28e-99 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu8g1806 zf-C2H2_6 6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1806 - - vra:106763495 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1806 8 45920629 45922057 Pvu8g1806 8 45920629 45922057 ECH