Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1805 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACCACGTTCACTAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACAGAAGAAATGCGCAAATATTTTGAGCAGTTTGGTGAGATTCTTGAAGCTGTCATTATCACTGATAAGAACACTGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCATGTGCTGATCCAAACCCAGTGATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTCGGAAGACCTAGACCATCACCACCAAGAGGAAGAGGAACATTCCAAGGAGGAGCACCGGGAACAGCTTCATACAGTGGTGTGCCGGCGGCTGGACCGTCGGCACTAGCACCGCCGCCGCCACCACCACCACCACCGCTGGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCATCAAGCCACATTGTATAACCCACAAATTCAGCAACCACAATACTACCAACAACTCTATGGACCATCCTCCTCCACCATGGCTTCCCCATATTACTATGGCTATTCTGTGCAAGCACCAAGAGGTACCTTTTCTACACCCCAACCACATCGCATACCAGCTGGACCCTCTTATCTATACTACCCTACACCAATGGAAGGCTCATTTTCTGCATACCGTCCACCACCTCAATTGCAACAACTTCCAATAAGGCAACCCCCTCCTTCCCCTAGTGACTCACAGACTCAGCAACGTACCTCGTCCGAGGCAGCAGGTGGAGTAGTTATAACTTCCGAAAGTTCAAATACCCAAGGGAGGAACTGA 828 0.4952 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGAPGTASYSGVPAAGPSALAPPPPPPPPPLVYPPYGYPTYTPDYGYHQATLYNPQIQQPQYYQQLYGPSSSTMASPYYYGYSVQAPRGTFSTPQPHRIPAGPSYLYYPTPMEGSFSAYRPPPQLQQLPIRQPPPSPSDSQTQQRTSSEAAGGVVITSESSNTQGRN* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1805 275 Gene3D - 3 111 IPR012677 -
Pvu8g1805 275 PANTHER - 1 265 - -
Pvu8g1805 275 MobiDBLite consensus disorder prediction 90 136 - -
Pvu8g1805 275 SMART rrm1_1 17 89 IPR000504 GO:0003723
Pvu8g1805 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Pvu8g1805 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Pvu8g1805 275 MobiDBLite consensus disorder prediction 223 275 - -
Pvu8g1805 275 CDD RRM_RBM24_RBM38_like 16 91 - -
Pvu8g1805 275 MobiDBLite consensus disorder prediction 245 275 - -
Pvu8g1805 275 PANTHER GEO13361P1-RELATED 1 265 - -
Pvu8g1805 275 SUPERFAMILY RNA-binding domain, RBD 9 117 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1805 Pvu-Chr8 45858269 45863276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1805 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 1.42e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1805 K25006 - gmx:100787086 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1805 8 45858269 45863276 Pvu8g1805 8 45858269 45863276 ECH
Pvu8g1805 8 45858269 45863276 Pvu9g0332 9 7052507 7057543 PCT