Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1788 ATGACGAACCGTAATGTGAATAACACTCTTCTGGAGTTTGCAATGTCGATTTCAAACTCAGGTGCTCTACCTAGAGCTGCAGTGCCTGGAATAATGGCTTTGCTTGGTGGGGTTTTAGGCCTACCCCAGAAAAAGCTCTTATTGAAAACTTTGGAGGATGGAAGTGGAAAAGGAGGAACCAAAGTTAACACATGGATTGATTCAATGAGAGCTTCTTCTCCCACACGAGTCAAATCCACGCAGAACCAAGACCCGAGTCCTTGGACTCTTTACCACCCTTCGGCACTGAACCTGTTTGATCAGATTATATGTGAGTCCAAAGGGAAGCAGATTGTCACTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTTGCAGACCCAGATAAAGCATACATGAGTCAAAAGATGAGGGCCACATTGAAGGACATAGCAAGGCATTTCCCCACTGCCATCGTGAGTGGAAGGTGCATAGACAAGGTGTATAGCTTTGTGAGATTGGCAGAACTGTACTATGCTGGGAGCCATGGAATGGACATCAAGGGACCAACAAATAGGCGAAGTACTAAGAAAGGAAACGAAGCAGTACTCTTCCAACCCGCGAGTGAATTCTTACCCATGATCAATGAGGTGTACAACATCTTGGTGGATAAAACAAAGCCTGTCCCGGGGGCTAAGGTAGAAAATAACAAGTTTTGTTTGTCCGTGCACTTTCGCTGTGTTGACGAAAAGAGTTGGGCATCATTGGCTGAACAAGTGAGCTTGGTCCTCGAACACTACCCCAAACTTAAGCTAACTCAAGGCAGAAAAGTGCTTGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGCTAGAATCACTTGGATATGGTAACTCTGATAATGTATTTCCAATCTATATTGGTGATGATCGAACTGACGAAGATGCTTTTAAGGTTTTACGGAAGAGGGGTCAAGGGATTGGAATTCTTGTTTCTAAAATTCCAAAAGAAACCGATGCTTCCTACACTTTGCAAGATCCAACTGAGGTTGGGCAGTTTTTGCGGCATTTGGTGGAGTGGAAAAGAACGAGTACCCAATACCACAAGTTGTAG 1110 0.4423 MTNRNVNNTLLEFAMSISNSGALPRAAVPGIMALLGGVLGLPQKKLLLKTLEDGSGKGGTKVNTWIDSMRASSPTRVKSTQNQDPSPWTLYHPSALNLFDQIICESKGKQIVTFLDYDGTLSPIVADPDKAYMSQKMRATLKDIARHFPTAIVSGRCIDKVYSFVRLAELYYAGSHGMDIKGPTNRRSTKKGNEAVLFQPASEFLPMINEVYNILVDKTKPVPGAKVENNKFCLSVHFRCVDEKSWASLAEQVSLVLEHYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYGNSDNVFPIYIGDDRTDEDAFKVLRKRGQGIGILVSKIPKETDASYTLQDPTEVGQFLRHLVEWKRTSTQYHKL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1788 369 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 114 321 IPR006379 -
Pvu8g1788 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 369 - -
Pvu8g1788 369 TIGRFAM T6PP: trehalose-phosphatase 109 357 IPR003337 GO:0003824|GO:0005992
Pvu8g1788 369 SUPERFAMILY HAD-like 114 360 IPR036412 -
Pvu8g1788 369 Gene3D - 111 195 IPR023214 -
Pvu8g1788 369 Gene3D - 225 368 IPR023214 -
Pvu8g1788 369 CDD HAD_TPP 114 350 - -
Pvu8g1788 369 Pfam Trehalose-phosphatase 114 346 IPR003337 GO:0003824|GO:0005992
Pvu8g1788 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 369 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1788 Pvu-Chr8 45202657 45205322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1788 107 364 Trehalose Biosynthesis Gene Families AT1G06410 26.642 3.81e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1788 K01087 - gmx:100792915 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1788 8 45202657 45205322 Pvu9g0308 9 6576204 6578174 PCT