Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1786 ATGGCAGCTATGATGGATTTGTACAACGGAGAACCACAAGTTCAGTCGGATCCATTCACAGGTGAGCTGATGGAAGTTCTAGAACCTTTTATGAAAAGTCCTTCCTCAACTCCCTCGTTATCTTCAGATTCAGCTTTACCTTCAACTTCGACTTCCTATTCCTACTCTCCTTACCCTCTTTCTCTCCCTCCACACCCCAATTTCTACACAGACCCTTCCTCCTCCTACCTATACCAAACCCAAACCCTTATAGGCTTTCAACAGCAACCCAGTTCTGTTGTTGGGCTCAACCACCTAAGCCCGTTTCAGGTTTCTCAGATCCAGGCTCAGATGCAGGCTCAGAGCCAGTCCTCCCTTTCCCTGAACTTCCTTGGCCCGAAGCCCGTGGCAATGAAGCAAGTGGGTGGGGCTCCGAAGCCCGCGAAGCTGTACCGCGGGGTGAGGCAGAGGCATTGGGGAAAGTGGGTGGCAGAGATCAGGCTCCCCAAGAACCGCACCAGGCTCTGGCTCGGAACCTTCGACACTGCCGAGGAAGCCGCTTTGGCGTATGACAAAGCCGCCTACAGACTCCGAGGCGACTTCGCCAGGCTCAACTTCCCGAACCTCAAAGGGTCGTTGCTCGGCGAGTACAAGCCTCTGCAGTCGGCGGTGGACGCTAAGCTCGACGCTATTTGTCAGAGCCTGGCCGAAATGCCGAAGCAGGGGAAGACGGAGAAGGGTGCCAGGTCATCATCCAAGAAGTCAAAAGCAGCTCCAAAGGAGGCTCGGAATCCGAACCAGGATCCCAACCCCAACCTTTGTTGTAAGGCGGAGCCTGAGCCTGAAGCCGAACCTGCTCTGTCCCCTGAAAGTGAGGGTTCTGTGGATTCTTCTCCGCTCTCTGATCTCACCTTTGATGTCAGCGAACCGCAATGGGAAGATGCTTCTGCACATTTTAACTTGCAGAAATTTCCTTCTTATGAGATCGATTGGGATTCTCTCTGA 984 0.5346 MAAMMDLYNGEPQVQSDPFTGELMEVLEPFMKSPSSTPSLSSDSALPSTSTSYSYSPYPLSLPPHPNFYTDPSSSYLYQTQTLIGFQQQPSSVVGLNHLSPFQVSQIQAQMQAQSQSSLSLNFLGPKPVAMKQVGGAPKPAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLKGSLLGEYKPLQSAVDAKLDAICQSLAEMPKQGKTEKGARSSSKKSKAAPKEARNPNQDPNPNLCCKAEPEPEAEPALSPESEGSVDSSPLSDLTFDVSEPQWEDASAHFNLQKFPSYEIDWDSL* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1786 327 Gene3D AP2/ERF domain 143 201 IPR036955 GO:0003700|GO:0006355
Pvu8g1786 327 MobiDBLite consensus disorder prediction 284 298 - -
Pvu8g1786 327 PRINTS Ethylene responsive element binding protein signature 144 155 IPR001471 GO:0003700|GO:0006355
Pvu8g1786 327 PRINTS Ethylene responsive element binding protein signature 166 182 IPR001471 GO:0003700|GO:0006355
Pvu8g1786 327 SUPERFAMILY DNA-binding domain 143 201 IPR016177 GO:0003677
Pvu8g1786 327 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 326 - -
Pvu8g1786 327 ProSiteProfiles AP2/ERF domain profile. 143 200 IPR001471 GO:0003700|GO:0006355
Pvu8g1786 327 Pfam AP2 domain 144 192 IPR001471 GO:0003700|GO:0006355
Pvu8g1786 327 MobiDBLite consensus disorder prediction 235 254 - -
Pvu8g1786 327 MobiDBLite consensus disorder prediction 232 302 - -
Pvu8g1786 327 CDD AP2 142 202 IPR001471 GO:0003700|GO:0006355
Pvu8g1786 327 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 326 - -
Pvu8g1786 327 SMART rav1_2 143 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1786 Pvu-Chr8 45116054 45117855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1786 1 327 AP2-EREBP Transcription Factor Family AT1G78080 49.020 9.77e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu8g1786 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1786 K09286 - gmx:100802961 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1786 8 45116054 45117855 Pvu9g0305 9 6536069 6538397 PCT