Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1767 ATGCATACAACACCCAACACAATACTCCACAGTTTCTACCTACACAATAACAATAATAACAACAACAATAATAGGATCGAAATGGGTCGTGTTAAACTCGAGATAAAGAGAATAGAGAACTCCACCAATCGACAAGTTACATTCTCAAAGCGAAGAAATGGCCTCATCAAGAAAGCCTACGAGCTTTCAATCCTCTGTGACATTGATATTGCCGTCATAATGTTTTCTCCCTCCGGTCGTGTCAACCACTTTTCCGGTAGGAGGAGAATTGAGGATGTTTTTACTCGCTACATTAATCTTCCTGACCAAGAAAGAGATAATGCTGTAAGTTTTCCAGAGCTACCGTACCGCAGGGGTATTCAGAATAAGGAGTATTTGCTTAGGACACTTCAGCAACTGAGGAGTGAAAATGACATAGCTCTTCAACTGGCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAATAGGCTACAACAGCAACTTCAAATGGCCGAAGAGCAGATAAGGTTATATGAACCCGACCCATTAAAGATGTCATCAATGGGAGATCTTGAAAACAGTGAAAAGCATCTGGTAGATGTCTTGACACGAGTCATGCAAAGAAAGGAATACTTAATGAGCCACCATCTATCTTCCTTTGATCCATCTAGTATTCAGGGAATACCTACCTCTTTCGACAATGTAGGTTGGTTGCAGGATGGGAGTCAAAATCATGCTCAGATTTTTGATGGATCTGCTCCTTTAGATCCACTCAGGGACTTATCTTCGACAGTGTATGGTTCATTTTCCCAAGGGACGAGTTCAAACGCTGATCCACGTGGCATGGGGGAGTGTCACGTGTCAAATCCAAGTGATGGGAGCCTTCAAGCATGGCCTCAAGGGTACACATTGTATCCTCATCATCATATTCAGCATGACATGGTGGGACCCGACATGCCGGATATGATGCCACATGCACAGGTGAGCATACCAATCACTGCCTCACACGTGGAACCACCACCCAAGAACGAGCCTGGAGAATATGACCAGTCTAAACAACAACAACAACCTCATCCTCATCCTCAGCAGCTTAATGCCCAATGA 1101 0.4378 MHTTPNTILHSFYLHNNNNNNNNNRIEMGRVKLEIKRIENSTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMSSMGDLENSEKHLVDVLTRVMQRKEYLMSHHLSSFDPSSIQGIPTSFDNVGWLQDGSQNHAQIFDGSAPLDPLRDLSSTVYGSFSQGTSSNADPRGMGECHVSNPSDGSLQAWPQGYTLYPHHHIQHDMVGPDMPDMMPHAQVSIPITASHVEPPPKNEPGEYDQSKQQQQPHPHPQQLNAQ* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1767 366 MobiDBLite consensus disorder prediction 333 366 - -
Pvu8g1767 366 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 28 305 - -
Pvu8g1767 366 CDD MADS_MEF2_like 29 102 IPR033896 GO:0000977|GO:0045944
Pvu8g1767 366 SUPERFAMILY SRF-like 29 106 IPR036879 GO:0003677|GO:0046983
Pvu8g1767 366 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Pvu8g1767 366 MobiDBLite consensus disorder prediction 346 366 - -
Pvu8g1767 366 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Pvu8g1767 366 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Pvu8g1767 366 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
Pvu8g1767 366 Coils Coil 146 180 - -
Pvu8g1767 366 ProSiteProfiles MADS-box domain profile. 28 88 IPR002100 GO:0003677|GO:0046983
Pvu8g1767 366 MobiDBLite consensus disorder prediction 265 292 - -
Pvu8g1767 366 PANTHER SERUM RESPONSE FACTOR HOMOLOG 28 305 - -
Pvu8g1767 366 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 84 IPR002100 GO:0003677|GO:0046983
Pvu8g1767 366 ProSitePatterns MADS-box domain signature. 30 84 IPR002100 GO:0003677|GO:0046983
Pvu8g1767 366 Gene3D - 40 113 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1767 Pvu-Chr8 44445268 44452176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1767 28 333 Type I MADS-box Gene Family AT1G22130 58.280 1.19e-119 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu8g1767 SRF-TF 5.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1767 - - pvu:PHAVU_008G170400g 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1767 8 44445268 44452176 Pvu8g1767 8 44445268 44452176 ECH