Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1750 ATGCCTCCGCCGCAGCCTCGTCGCGTCGACCCCAAAATCTGGAGGGCATGCGCCGGCGCCGCTGTGCACATCCCGAAGCTGCATTCTAGGGTTTACTACTTCCCTCAGGGACACATGGAGCACGCCTCTCCCTCACATTCGCTCTCCCCTGCCTACCGTTCCCCTCCCTTTGTTCTTTGCCACGTGTCCTCCCGTGATTTGCTCGCTGATCCATTCTCCGACGAGGTCTTCGCCAAGCTCCTCCTCACTCCCCTCCCTCACCCCTTCCACCACAACCAGAACGACGACAGCAACAGCCAAAACGAGGACGAAGACGACCGCGACTGCCAAAACGGCGTCGTTTCGTTCTCCAAAATCCTCACGCCCTCCGACGCCAACAACGGCGGGGGATTCTCCGTGCCGCGCTTCTGTGCGGACTCCGTCTTCCCTCCGCTAGATTTCCGCGCCGATCCTCCCGTCCAGCTTCTCTCCGTCACCGACGTCCACGGCGTCGCGTGGCGGTTCCGCCACATCTACCGTGGCACTCCACGTCGGCACCTCTTCACCACCGGCTGGAGCAAGTTCGTCAACCACAAGAAGCTCATCGCCGGAGATTCCGTCGTCTTCGTCAAGGACTCCGACGGGAACGTCTCAGTCGGGATCCGCCGTGCTACGCGCTTCGTCTCCTCTTCCTCTCTTGTGGAGGCGGAGCAGCCGCCGGCGCAGGGGGAGGGCTTTTCGCGAAGCGCTACCGGGAGAGTATCGCCGAAGGCGGTGGCGGCCGCGGCGGAGTGCGTGGCGCGGAACGCGCCGTTTGAAGTTGTGTATTATCCGAAGGCGGGTTTTGCGGATTTTGTGGTGAGTGCTGAGGTTGTGGAGGACGCGATGAAGTGCGCGTGGGTTGGTGGAATGAGAGTGAAGATAGGAATGGAGACCGAGGATTCTTCTAGGATGACGTGGTTTCAAGGGACGGTGACTTCTGCGTATGCCTCTGATAATGGACCTTGGCGCATGCTTCAGGTTAACTGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCGAGTCAGTCCTTGGCAGGTTGAACTTGTTTCCCCCTCACTTGCACCCCATCCCGCCTTTTCCCCTTCAAAAAGGTTTAGAGCTGACCAGGGTTCTGGACTGTTAAGTGATAGGGAGGGAGACCCCTTCTTTCCTATGACAGGTTTCCCTAACTCAACAATGGGAAACATGGATAAAAGATTGTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCTAGTTTTTCCAACTTTTTAAACGATAACTCTTATATGTACATGGGTAGTACTTCCTTTGGGAACAATACAGTGCAAAGTTTGGGAATTGTTTCAACAGAGCTAAACATGAGCAGTTCTCAATCAGATGACCTGTCACCACATAGCCAGAGTAGTTTACATTCCTTTGACACAGAGTTTACTGGGACCCGGCAGTGCAACACCAAAGTTGGTTCTGGTTCAATCCTGCTATTTGGTAAGATCATACAGCCTGCTGAAACTCATTTGCATGATGCTGCTGATTACATGGAACGTGATGGCAGCAGGGGCAACAAAGAAACTGAAGACAGTTGA 1614 0.5465 MPPPQPRRVDPKIWRACAGAAVHIPKLHSRVYYFPQGHMEHASPSHSLSPAYRSPPFVLCHVSSRDLLADPFSDEVFAKLLLTPLPHPFHHNQNDDSNSQNEDEDDRDCQNGVVSFSKILTPSDANNGGGFSVPRFCADSVFPPLDFRADPPVQLLSVTDVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLIAGDSVVFVKDSDGNVSVGIRRATRFVSSSSLVEAEQPPAQGEGFSRSATGRVSPKAVAAAAECVARNAPFEVVYYPKAGFADFVVSAEVVEDAMKCAWVGGMRVKIGMETEDSSRMTWFQGTVTSAYASDNGPWRMLQVNWDEPEVLQNAKRVSPWQVELVSPSLAPHPAFSPSKRFRADQGSGLLSDREGDPFFPMTGFPNSTMGNMDKRLLSYDTFPAGMQGARHDLFSASSFSNFLNDNSYMYMGSTSFGNNTVQSLGIVSTELNMSSSQSDDLSPHSQSSLHSFDTEFTGTRQCNTKVGSGSILLFGKIIQPAETHLHDAADYMERDGSRGNKETEDS* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1750 537 Gene3D - 113 218 IPR015300 -
Pvu8g1750 537 CDD B3_DNA 115 216 IPR003340 GO:0003677
Pvu8g1750 537 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
Pvu8g1750 537 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 530 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu8g1750 537 SUPERFAMILY DNA-binding pseudobarrel domain 110 223 IPR015300 -
Pvu8g1750 537 SMART B3_2 116 218 IPR003340 GO:0003677
Pvu8g1750 537 PANTHER AUXIN RESPONSE FACTOR 5 530 - -
Pvu8g1750 537 Pfam Auxin response factor 255 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu8g1750 537 MobiDBLite consensus disorder prediction 88 108 - -
Pvu8g1750 537 Gene3D - 294 360 - -
Pvu8g1750 537 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1750 Pvu-Chr8 43876161 43880342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1750 7 535 B3 DNA Binding Superfamily AT1G77850 48.214 1.26e-160 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu8g1750 B3 2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1750 - - gmx:100804933 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1750 8 43876161 43880342 Pvu8g1750 8 43876161 43880342 ECH
Pvu8g1750 8 43876161 43880342 Pvu9g0269 9 5991977 5995817 PCT