Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1712 ATGGACGACCCTGATTTCCTCGACTTCTCCAATCGCAGCATCACCACCAGTGCTTCCTCCGAGGAAGACTGGACCAACCTGTGGTCCCCCGTCGTCGATTGGGGATCCCTTGCCGCCGGCGAAGACAATTTTCAAACCCTATTTGACTCCATCGTCCATAAAGACGACGTCGTTCTGACCCCAGATCAAACCACAGCCCAAGACTCCGACTTAAGTGGTCATGATGAGAAGGGCCTCCGCCTGGTGCACCTCCTCATGGCGGCGGCGGAGGCCCTAACCACCGGCACCGAGAGCCACCACCTGGCTCGAGTGATATTGGTTCGGCTCAATGAGTTGGTGTCCCCCACCCACGGCACCAACATCGAAAGACTCGCGGCGCACTTTAGCAGCGCACTCCAAAATCTGCTAGACGGCGCCGGGAGTTCCCACACCATAACCAACAATACCCCCAACCCCACGGACACGCTCACCGCGTTCCACCTTCTCCAGGACATGTCTCCTTACGTCAAGTTCGCTCACTTCACCGCCAACCAGGCCATCTTAGAAGCCGTGGCCCATGAAAAACGGGTCCACATCGTCGACTTCGACGTCACCGAAGGGGCCCAATGGGCCTCCCTAATGCAGTCCCTTTCGTCAAGAAGCACCGGCCCACCAGGCCCACACCTTCGCATCACGGCATTGTCCAGAGGCTCGGCCTCTGGACGGAGATCCATTGCCACCGTTCAGGAAACCGGACGGAGGCTAACGGCGTTCGCGGCTTCCGTGGCCCAACCGTTTTCTTTTCACCAGTGTCGGCTGGACCCTGGCGAAACGTTTCGACCTTCGTTACTGAAGCTGATTAGAGGCGAGGCCTTGGTGTTTAACTGCATGCTGCACTTGCCGCACTTGAGCTTCAGAGCCTCAGGTTCGGTTGCTTCGTTTCTAAAAGGTGCGAAGGAGTTGAACCCGAGGGTGGTGCTGGTTGTAGAGGAAGAGGTGGCGCGTGGTGGAGATGCGGGCTTTGTCGGCCTGTTTATGGATTCGGTGCAGCACTACTCCGCCGTGTTTGATTCGCTGGAGGTTGGGTTTCCGATGCAGAAATGGGCCCGGGCTTTGGTGGAGCGCGTGTTTTTGGGCCCAAGAATTGCAAATTCTGTAGGCCTTATGTACCAGAGTGGAGAAGAGGAGAGAGGGTCGTGGGAGGAGTGGTTGGGTGCGGCGGGGTTTAGGGGAGTTCCCGTAAGCTTCGCTAATCATTGCCAAGCGAATCTGTTACTAGGACTGTTTAACGATGGATATAGAGTGGAGGAGTTGGGGAACAATAAATTGGTGTTGGGTTGGAAATCACGCCGTTTAATTTCAGCCTCCGTTTGGACTTCAAACTCTTGA 1368 0.5621 MDDPDFLDFSNRSITTSASSEEDWTNLWSPVVDWGSLAAGEDNFQTLFDSIVHKDDVVLTPDQTTAQDSDLSGHDEKGLRLVHLLMAAAEALTTGTESHHLARVILVRLNELVSPTHGTNIERLAAHFSSALQNLLDGAGSSHTITNNTPNPTDTLTAFHLLQDMSPYVKFAHFTANQAILEAVAHEKRVHIVDFDVTEGAQWASLMQSLSSRSTGPPGPHLRITALSRGSASGRRSIATVQETGRRLTAFAASVAQPFSFHQCRLDPGETFRPSLLKLIRGEALVFNCMLHLPHLSFRASGSVASFLKGAKELNPRVVLVVEEEVARGGDAGFVGLFMDSVQHYSAVFDSLEVGFPMQKWARALVERVFLGPRIANSVGLMYQSGEEERGSWEEWLGAAGFRGVPVSFANHCQANLLLGLFNDGYRVEELGNNKLVLGWKSRRLISASVWTSNS* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1712 455 PANTHER SCARECROW-LIKE PROTEIN 26 62 452 IPR030028 -
Pvu8g1712 455 Pfam GRAS domain family 81 452 IPR005202 -
Pvu8g1712 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 62 452 IPR005202 -
Pvu8g1712 455 ProSiteProfiles GRAS family profile. 72 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1712 Pvu-Chr8 42672531 42673898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1712 78 454 GRAS Transcription Factor Family AT5G41920 35.142 2.32e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pvu8g1712 GRAS 1.1e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1712 - - pvu:PHAVU_008G165200g 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1712 8 42672531 42673898 Pvu8g1712 8 42672531 42673898 ECH