Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu8g1711 | ATGCCACTGAACCGTTGCCAAAGCAAAACCACAAGGTGGTATCAGCTATGCTTTGTTCCCACTAGTTCAGATAGTTCAGATGATTCGGACGTAGAATCTGTAGTCCTTACTCCTAGTACTCCAACTACAACTAGTACCACATGGCAAGAACTTTCTCCTCCACCACCACCAAATCCTCAACCTCAAGTTGATTGGCGTTTTCCACCACCGCCACCACCGCCGCCACATTTTGTACAGCACACCCGGGCTTGGGATAGATATTTTAACATAGAGGTACAGCAAGATAGAGCTCAATCTCCCAGTCCAAGTCATGTGTTTGAAGGTGGTAAGAGTGGGTGCTCAACGAATGCCATGAATGACCTTAGCAGGGAAAGATTATCAGAGATGGATAAAGTCTTTCTCTGTCCCATTTGCATGGATGACTTTAAAATGTGTGATCAAGCATACCGGTTACCCTGCAACCACACCTTTTGTTCTGAATGCATTCTTCGTTGGCTTAACAGCAGCAAAACATGTCCAGTTTGCAGGCTTCAATTGAATGGTTATAATTTTGATAGCATAAATGATGATAATGATTTCAACTCACAACTTGAATTTCTATTATTGTCACCGTCACCACCGTCATCAATAGTACACAATGATTCACCTCAGCGCTCGGACTACTTTGACGAATCTTCTCTCTACCCTACACCAGGTATAGAGAATAGTGCAAGTGGTAACTCAGATGAAGCTGATTATGATAGTGCATCTGATGAGTTTGGTGATTCTCAAGAAGATGGTGCTTCTCATACTGCTTCCGATACTCTAATTTAA | 813 | 0.428 | MPLNRCQSKTTRWYQLCFVPTSSDSSDDSDVESVVLTPSTPTTTSTTWQELSPPPPPNPQPQVDWRFPPPPPPPPHFVQHTRAWDRYFNIEVQQDRAQSPSPSHVFEGGKSGCSTNAMNDLSRERLSEMDKVFLCPICMDDFKMCDQAYRLPCNHTFCSECILRWLNSSKTCPVCRLQLNGYNFDSINDDNDFNSQLEFLLLSPSPPSSIVHNDSPQRSDYFDESSLYPTPGIENSASGNSDEADYDSASDEFGDSQEDGASHTASDTLI* | 271 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu8g1711 | 270 | Pfam | Ring finger domain | 135 | 176 | IPR001841 | - | |
| Pvu8g1711 | 270 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 213 | IPR013083 | - | |
| Pvu8g1711 | 270 | MobiDBLite | consensus disorder prediction | 221 | 244 | - | - | |
| Pvu8g1711 | 270 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 108 | 185 | - | - | |
| Pvu8g1711 | 270 | SUPERFAMILY | RING/U-box | 134 | 179 | - | - | |
| Pvu8g1711 | 270 | MobiDBLite | consensus disorder prediction | 21 | 71 | - | - | |
| Pvu8g1711 | 270 | MobiDBLite | consensus disorder prediction | 50 | 71 | - | - | |
| Pvu8g1711 | 270 | ProSiteProfiles | Zinc finger RING-type profile. | 135 | 176 | IPR001841 | - | |
| Pvu8g1711 | 270 | SMART | ring_2 | 135 | 175 | IPR001841 | - | |
| Pvu8g1711 | 270 | MobiDBLite | consensus disorder prediction | 221 | 270 | - | - | |
| Pvu8g1711 | 270 | ProSitePatterns | Zinc finger RING-type signature. | 153 | 162 | IPR017907 | - | |
| Pvu8g1711 | 270 | MobiDBLite | consensus disorder prediction | 21 | 49 | - | - | |
| Pvu8g1711 | 270 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF181 | 108 | 185 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu8g1711 | 135 | 196 | C3H Transcription Factor Family | AT2G44330 | 37.500 | 5.23e-11 | 58.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu8g1711 | K11982 | - | pvu:PHAVU_008G165100g | 496.893 |