Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1691 ATGGCTGACAATCACATCTCCACCGATTCTCCTCTCTCTCGTCGCATAGTTCGTGCCTTCCTCAGCTTCCTAAATTCTGTTGAACTGGGACGTGGGGTTGATGCTGAGGGGATTGAGGTTGCTAGAGAGTGTTTGACAGAGGCTTTCAAGCTTAATTCGTCTTCTGTGGCTGGGGATGACGTGAAATCTGATTCTTTGATTGATATGTTCAAGTCTCTTGAAGCTAACAAGAAAAGTGAAACTAGGAAGTCAGATACTCGACGGAATTCTGCGAATGCTTCTAGTTCATTCTCTTCTGAGGCGTCAAAATCTACGGTTGAAGATTCAACACAGGGCCATCGTGCTTTTGCATCTAAAGATGAACTGTGCGGACAATTCTTTGCTGCTCTGGAGAAAAATCACTATTTCAGGAGAAATACTGATGGGAGTGATGACCAAGTGCAACTGGAGAAAGCATGTTCTTTATTTGACGAGGCTTATAAGGAGATGGTAAGATCCGGTTGTCAGCGGTTTTGTTTGGAGAGTTTGGCTGAATCACTAAAAACATTAGGTAACAACGCAATGCAATTTAAGAAATACAATGATGCAATTGAGTTGTATAATTGTGCCATTGCAGTCAAGGAAAATAATGCTGTTTACTTCTGCAACAGGGCAGCTGCTTACACTCAGGTTAACAAATATTCTGAAGCAATTCTAGATTGTCTTAGGTCTATCAAGATTGATTCAAACTACAGCAAGGCATACAGTCGTCTGGGTTTGGTTTATTATGCTCAAGGAAATTACAGGGAGGCCCTTGATAAAGGGTTTAGAAAAGCCTTGCAGTTGGATCCAAATAATGAATCTGTGAAAGAAAATATACGGGTGGCTGAGCAGAAATTGTTAGAAGAGCAACACCGTGCACATCACAACCAGAGTTTAACAAGGTCATCTCGAGAAGTTCCAAACCAATCTGCACAAGGATCAGGAAGCCAGGGGGGGCCACGTACATTTTCTACTACGTCTTCTACTACGACGGTTCACCCCACCACTACTACTCGGCGTACGACTACGACTACTGAAATTTTAAACATGGACCAAATTCCGGAGAATCTAAGAGGGCCCTTTCAATCTATGATGGCAACGTTATCTAGGACTGTAACCCCTGGCCAACCACATGATCAAACCAATCGAAGAACAGGACCAAACTAA 1188 0.4285 MADNHISTDSPLSRRIVRAFLSFLNSVELGRGVDAEGIEVARECLTEAFKLNSSSVAGDDVKSDSLIDMFKSLEANKKSETRKSDTRRNSANASSSFSSEASKSTVEDSTQGHRAFASKDELCGQFFAALEKNHYFRRNTDGSDDQVQLEKACSLFDEAYKEMVRSGCQRFCLESLAESLKTLGNNAMQFKKYNDAIELYNCAIAVKENNAVYFCNRAAAYTQVNKYSEAILDCLRSIKIDSNYSKAYSRLGLVYYAQGNYREALDKGFRKALQLDPNNESVKENIRVAEQKLLEEQHRAHHNQSLTRSSREVPNQSAQGSGSQGGPRTFSTTSSTTTVHPTTTTRRTTTTTEILNMDQIPENLRGPFQSMMATLSRTVTPGQPHDQTNRRTGPN* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1691 395 PANTHER LD24721P 9 353 - -
Pvu8g1691 395 ProSiteProfiles TPR repeat profile. 245 279 IPR019734 GO:0005515
Pvu8g1691 395 Pfam TPR repeat 220 259 - -
Pvu8g1691 395 Gene3D Immunoglobulin FC, subunit C 2 77 - -
Pvu8g1691 395 Coils Coil 279 299 - -
Pvu8g1691 395 MobiDBLite consensus disorder prediction 307 358 - -
Pvu8g1691 395 Gene3D Tetratricopeptide repeat domain 174 335 IPR011990 GO:0005515
Pvu8g1691 395 SUPERFAMILY TPR-like 176 290 IPR011990 GO:0005515
Pvu8g1691 395 MobiDBLite consensus disorder prediction 298 360 - -
Pvu8g1691 395 SMART tpr_5 177 210 IPR019734 GO:0005515
Pvu8g1691 395 SMART tpr_5 211 244 IPR019734 GO:0005515
Pvu8g1691 395 SMART tpr_5 245 279 IPR019734 GO:0005515
Pvu8g1691 395 MobiDBLite consensus disorder prediction 88 110 - -
Pvu8g1691 395 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515
Pvu8g1691 395 PANTHER LD24721P 9 353 - -
Pvu8g1691 395 MobiDBLite consensus disorder prediction 77 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1691 Pvu-Chr8 41927125 41936504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1691 175 275 U-box Gene Family AT3G07370 30.693 3.04e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1691 K16365 - gmx:100799770 486.493