Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1652 ATGGAACAACAACAGCAACAAAACAGCATCCTATGCAAATACACTGTACACAAATGTTTCATGAAAAAACACACAAAACCAAAAACTACTTCGCGTTTGCCCAAAGTTATTTCCATATCCGTAACCGATCCATTCGCCACGGATTCATCCAGCGACGATGAAAAACCCCCACGCCGAAGAGTGAAGCGCTACGTCAACAGAATCGAACTTCCACTCGCGTGCAAAGCAGTCGCTTCTAAGAAGAGACACGCCGGAGAAAGCACTGCTATTCGGGCGCCGGAGCCGGGGAGAGTGGATAATTCCGGGAACGAGAAGAAGTTCCGCGGCGTGCGGCAGCGGCCATGGGGGAAATGGGCGGCGGAGATAAGAGATCCCGCGAAGCGCATGAGGATCTGGCTCGGAACTTTCGACACCGCTGAGGAAGCTGCATTGGTTTACGACAATGCCGCGATTACACTTCGCGGCCCTGACGCATTAACGAACTTCGCGACGAACCAGGAGAAGGAAGCAACAGAAAAAGAAGACCCCACCGGAAAACGGGAAATGAACGTGGTGGTGAAGCCGGAGACCGAAGTCTCCGATTACGACTCAAGCGAGGAGTGCTGTCACAACCTCCCCTCGCCCACGTCGGTTCTCCGCTTCAACGACCCGGAGAAACCGGCACAGCCGTTTGCTGGTCGAAGTGGAGCGGTGGAAGAGTTCGAAGGCGAGATGCTATCGTTTCACGAAAATAGGGAATTTTTGTTACAGGACATGCTGTGGGATGACGTGTTTAACTTTCCCGTTATCTTTGACGAGCCTGTTTCGCACTTGTTTGACGAAACGACGCGGTTTTCTGTTAATGACGGTTTCGTTGCTATTACAGATTCTGAAGAAAAATACTCGCCGTCAAAGTCTTTGTGCCAAGTAGACGATTATTTTCAAGACATTTTGTTAGGGTCAGATCCTCTGGTGGCTCTGTGA 963 0.5078 MEQQQQQNSILCKYTVHKCFMKKHTKPKTTSRLPKVISISVTDPFATDSSSDDEKPPRRRVKRYVNRIELPLACKAVASKKRHAGESTAIRAPEPGRVDNSGNEKKFRGVRQRPWGKWAAEIRDPAKRMRIWLGTFDTAEEAALVYDNAAITLRGPDALTNFATNQEKEATEKEDPTGKREMNVVVKPETEVSDYDSSEECCHNLPSPTSVLRFNDPEKPAQPFAGRSGAVEEFEGEMLSFHENREFLLQDMLWDDVFNFPVIFDEPVSHLFDETTRFSVNDGFVAITDSEEKYSPSKSLCQVDDYFQDILLGSDPLVAL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1652 320 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Pvu8g1652 320 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 11 315 - -
Pvu8g1652 320 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Pvu8g1652 320 SUPERFAMILY DNA-binding domain 106 164 IPR016177 GO:0003677
Pvu8g1652 320 MobiDBLite consensus disorder prediction 79 110 - -
Pvu8g1652 320 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 315 - -
Pvu8g1652 320 Gene3D AP2/ERF domain 105 165 IPR036955 GO:0003700|GO:0006355
Pvu8g1652 320 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Pvu8g1652 320 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Pvu8g1652 320 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Pvu8g1652 320 CDD AP2 105 163 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1652 Pvu-Chr8 40680584 40682430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1652 12 312 AP2-EREBP Transcription Factor Family AT4G27950 38.529 6.50e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu8g1652 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1652 - - pvu:PHAVU_008G159400g 655.21