Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1646 ATGGAATCACAGAAAAGTCCATTAATAGATGACAGCTTATTTGATATTTTCCAAGAAACGGAGTTTCGGGACACTGACTTTGATGGATGGGACCTCCTTTCCATTTTGGAGAGCCTACAAGACTTGAAACATTTCCCCCCCATCAACAATGAAGCTGTTGTTTTCCCAACTTCAAAAGAAAACGAGCAAAACTCAACTATGGAGTCCCAAAAGGTCTCCATATCTTTAAGTGCTCCACAACATTCTGAAACAGAGCCTGAAATCTCACCCAAAAGCAAGACAAAAAAGCTTCACCCCACCTTGCTAGAGGAACCACCGAAGGTGTCTCATATAACAGTGGAGCGCAACCGCAGGAAGCAAATGAATGAGAACTTCTCCGTATTGAGGTCACTTGTGCCTTCCTTCTATGTCAAACGGGGAGACCAAGCATCAATAATTGAAGGTGTGGTTGATTACATCAAGGAGTTGCAACAGCTGCAGCAATGCCTAGACGCAAAGAAACAAAGAAAACTTTACAGTGATGTACTAAGCCCTAGGCTAATTTCAAGCACAAGGCCTTCACCACTAAGTCCTAGAAAACCACCCTTGAGCCCTAGAATAAACCTGCCCATTAGTCCAAGGACTCCACAGCCTGGCAGCCCTTACAAGCCCAGGTTGCAACCAGGTTACCTCTCCCCAACTATAGCCAACTCTCCCACTTCTTCAGCTTCTTCTTCCATCAACGACAATATCAACGAGCTTGTTGCAAACTCCAAGTCTGTTATTGCCGATGTCGAGGTCAAGTTTTCAGGTCCACATGTTCTTCTGAAGACAGTTTCACCACCAATTCCTGGACAGGCTCTGAGAATAATATCAGCTCTTGAAGACCTACCACTCGAAATCCTCCATGTGAATATCAGCATTGCTGATGAAACCATGATCAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCCAAACATCGCTTCCAGACTCCAGAACGACCATCAGACCTCACCCTTCCCCTTTTTAG 1059 0.4457 MESQKSPLIDDSLFDIFQETEFRDTDFDGWDLLSILESLQDLKHFPPINNEAVVFPTSKENEQNSTMESQKVSISLSAPQHSETEPEISPKSKTKKLHPTLLEEPPKVSHITVERNRRKQMNENFSVLRSLVPSFYVKRGDQASIIEGVVDYIKELQQLQQCLDAKKQRKLYSDVLSPRLISSTRPSPLSPRKPPLSPRINLPISPRTPQPGSPYKPRLQPGYLSPTIANSPTSSASSSINDNINELVANSKSVIADVEVKFSGPHVLLKTVSPPIPGQALRIISALEDLPLEILHVNISIADETMINSFTIKIGIECQLSAEELAQQIQQTFCQTSLPDSRTTIRPHPSPF* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1646 352 PANTHER - 11 334 - -
Pvu8g1646 352 MobiDBLite consensus disorder prediction 75 98 - -
Pvu8g1646 352 SMART finulus 111 162 IPR011598 GO:0046983
Pvu8g1646 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 156 IPR011598 GO:0046983
Pvu8g1646 352 PANTHER TRANSCRIPTION FACTOR FAMA 11 334 IPR044283 GO:0003700|GO:0010052
Pvu8g1646 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 173 IPR036638 GO:0046983
Pvu8g1646 352 Coils Coil 149 169 - -
Pvu8g1646 352 Pfam Helix-loop-helix DNA-binding domain 107 157 IPR011598 GO:0046983
Pvu8g1646 352 MobiDBLite consensus disorder prediction 182 220 - -
Pvu8g1646 352 MobiDBLite consensus disorder prediction 188 216 - -
Pvu8g1646 352 Gene3D - 102 171 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1646 Pvu-Chr8 40568411 40571580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1646 15 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 47.175 1.45e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu8g1646 HLH 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1646 K20558 - gmx:100809717 478.789