Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1640 TGCCACAATGGACACACATTGTGTTCCACTTGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTAGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCCGAAATCTTTCCTTATTACAGCAAGCTTAAGCATGAGACAGTATGCAATTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTTGGGGACATTCCCTTCCTTGTTGCACATTTGAGGGATGATCATAAGGTGGATATGCACACTGGTTGCACATTCAACCATCGTTATGTGAAGTCCAATCCTCGTGAAGTAGAGAATGCAACTTGGATGCTCACCGTATTTTATTGTTTTGGCCAATACTTCTGCCTTCACTTCGAAGCTTTCCAGCTTGGCATGGCTCCTGTTTACATGGCATTCCTTCGATTTATGGGTGATGAGAACGAGGCTCGTAACTACAGCTACAGCCTTGAAGTTGGGGCAAATGGCAGGAAACTCATTTGGGAGGGTACACCACGAAGTATTCGCGATAGCCACCGGAAAGTCAGAGATAGCCATGACGGTCTCATTATTCAACGAAACATGGCCTTATTTTTCTCTGGAGGTGATAAGAAGGAGCTGAAACTAAGAGTCACAGGAAGAATATGGAAGGAACAACAGAATCCCGATGCTGGGGTGTGCATACCAAATCTTTGCAGCTAA 750 0.448 CHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFYCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGVCIPNLCS* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1640 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 93 IPR013083 -
Pvu8g1640 249 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 240 - -
Pvu8g1640 249 CDD Sina 101 229 - -
Pvu8g1640 249 SUPERFAMILY TRAF domain-like 40 232 - -
Pvu8g1640 249 ProSiteProfiles Zinc finger SIAH-type profile. 40 100 IPR013010 GO:0008270
Pvu8g1640 249 PANTHER OS05G0238200 PROTEIN 1 240 - -
Pvu8g1640 249 Pfam Seven in absentia protein family 29 228 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pvu8g1640 249 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 94 228 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1640 Pvu-Chr8 40326757 40328492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1640 1 235 C3H Transcription Factor Family AT2G41980 82.128 7.34e-148 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1640 K04506 - fve:101313744 533.872