Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1629 ATGTTGGATTACGAATGGAACACATCAATGATACTACTCGCCGGAAATGAAGCCGCTGGCGGCGAACCCGACCAAACGCGCCGGCAAATCTTCGACCACAACTTCGCCATGTTAACTGACCCCATTCTACATGGCTCAACACCAACAGCCACCACTGCTTTCTCACATCACCACCCCTTCAACCCACAACAACAGCACCACCAGCAAGCCTTCTTCGACCCACGTGCCTTCCAAAGCGCGTCCACCACTTCCTTCTCGCCACCACCTTCGTTGCTCTCACTTAACCCAATCCCACCTTTAGCCCCCTCCCACTGTGGGCTTGGACCTGGCTCCGGGCTTGGATTTCTGCTCATGTCCAAGTCTGAGGATGTCACTTCGCCCATGAACTTCGACGTCTCTGGTCATGGTCTCGGGCCTGGGCTTGGACTCAACCTCGGAGGCCGCACTTATTTTGCGGCTTCCAACGAAGACACCCTGGACAGATTCTACCGTTCCAAGACCGTGGAATCGGTTTCCACGGTGTCGTCAAATTTGCCACGCTGTCAGGCAGAAGGATGTAATACGGACCTCTCCGAAGCCAAGCACTACCACCGCCGCCACAAAGTTTGTGAGTTCCACTCCAAGGCTGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTTTCAGAATTTGACAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCACAATCGTCGCAGAAGAAAAACTCAGCAGCCAACTCAAGACATTCACAAATCTCAGCCTTCTTCGGACAATGTTACATGGTCCTCGTCTGAATCTGGAGCTCAATCTTCCTCATCGCTGAAGGTGGCAGTGTCTCCCCCAGATTATTTCCAGCAAAGACCCAATCAAAATAGAGACACTTCTTCAACATCATCTGGGTCATTGTTTTTCTCATGTGGGACCAATTTGCATGGCTAA 978 0.5235 MLDYEWNTSMILLAGNEAAGGEPDQTRRQIFDHNFAMLTDPILHGSTPTATTAFSHHHPFNPQQQHHQQAFFDPRAFQSASTTSFSPPPSLLSLNPIPPLAPSHCGLGPGSGLGFLLMSKSEDVTSPMNFDVSGHGLGPGLGLNLGGRTYFAASNEDTLDRFYRSKTVESVSTVSSNLPRCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQDIHKSQPSSDNVTWSSSESGAQSSSSLKVAVSPPDYFQQRPNQNRDTSSTSSGSLFFSCGTNLHG* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1629 325 Pfam SBP domain 181 254 IPR004333 GO:0003677
Pvu8g1629 325 SUPERFAMILY SBT domain 179 258 IPR036893 GO:0003677|GO:0005634
Pvu8g1629 325 MobiDBLite consensus disorder prediction 244 313 - -
Pvu8g1629 325 MobiDBLite consensus disorder prediction 260 313 - -
Pvu8g1629 325 Gene3D - 176 242 IPR036893 GO:0003677|GO:0005634
Pvu8g1629 325 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 65 305 - -
Pvu8g1629 325 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 65 305 IPR044817 GO:0003677
Pvu8g1629 325 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1629 Pvu-Chr8 39805679 39808531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1629 1 228 SBP-box Gene Family AT1G02065 42.105 3.99e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu8g1629 SBP 6.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1629 - - var:108328505 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1629 8 39805679 39808531 Pvu8g1629 8 39805679 39808531 ECH