Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1628 ATGGAGTTCGGGGGGAACATCTTCTGCCTCGCCAACAGAGACCAAAATGGAAATACTAACGGTAACACTTTCGCTTGGGATTCATGGCAAACAACCACTTTTAATAATAACAACAACACCACTTCCAGGTTGGTCAACGCTTTCAACGCCCCCGTCACTGGGGTCACCGCGCCGGAGACCTCAGCCGCAAACCGCCCCGAGGCCGCGGGACTCGCCAGCGCTCTCATGTTCCTCCCTCAAAACGGAGGCGTTTTGCGTCACCGCCAGCAGCAGCAGCAGCAACAGCATCCGTACGGTGGGGATGGGTCCCACGTGCACCCCGACCCACACCTCATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGACGCTAGTGGAAGTGGAACCGTTTCTTCTGCTGCTGCTTCTGCTGCTACTGCGACTACTTTTGGCGGGGGGTTGGTGTTAGGGGATAAGAGAGGGAAAGGAGGGTATTCCGGCGGCGGTGCGGCGGTGAAGGGTGTGGGGTTGACGACGGCGACGGTGCCGAGGTGTCAGGTGGAAGGGTGCCAGGTGGCGCTGCTGAACGCCAAGGACTACCACCGGAGGCACAAGGTGTGTGAGATGCACTCCAAGGCTCCCAAAGTTGTGGTCTTAGGGTTGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATGATTCAAAGAGAAGTTGTAGGAGGAGACTAGCAGGTCACAATGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTGGCAAGGAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGAAGTGATTCTTGGCTTTCTCCTTCTGATCTCTCAACAAGATGCAGTGCTGCATTGCGTGAATTGATAGCAGAAAACCGGGCAGCAATCATGGCAAGACAGTTTGTATCAGATAGAGATTGGCATATTCAGCACCATGCTATGGAAGACATGAAGGAGATCCAACCTGAGTCCACTTACTTCCCACAACAGATGTTTCCCCAGACACAGTGA 1035 0.5353 MEFGGNIFCLANRDQNGNTNGNTFAWDSWQTTTFNNNNNTTSRLVNAFNAPVTGVTAPETSAANRPEAAGLASALMFLPQNGGVLRHRQQQQQQQHPYGGDGSHVHPDPHLMCLKLGKRHYFEDASGSGTVSSAAASAATATTFGGGLVLGDKRGKGGYSGGGAAVKGVGLTTATVPRCQVEGCQVALLNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRDWHIQHHAMEDMKEIQPESTYFPQQMFPQTQ* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1628 344 MobiDBLite consensus disorder prediction 243 264 - -
Pvu8g1628 344 MobiDBLite consensus disorder prediction 85 105 - -
Pvu8g1628 344 MobiDBLite consensus disorder prediction 85 99 - -
Pvu8g1628 344 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 49 344 IPR044817 GO:0003677
Pvu8g1628 344 Pfam SBP domain 179 252 IPR004333 GO:0003677
Pvu8g1628 344 SUPERFAMILY SBT domain 177 258 IPR036893 GO:0003677|GO:0005634
Pvu8g1628 344 Gene3D - 171 240 IPR036893 GO:0003677|GO:0005634
Pvu8g1628 344 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 49 344 - -
Pvu8g1628 344 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1628 Pvu-Chr8 39631062 39637027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1628 112 252 SBP-box Gene Family AT1G27370 51.773 2.13e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu8g1628 SBP 7.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1628 - - var:108327478 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1628 8 39631062 39637027 Pvu8g1628 8 39631062 39637027 ECH