Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1613 ATGGATAAAAAACAGTGCAATACGTCTCAAGATCCTGAAGTGAGAAAAGGGCCATGGACAATGGAAGAAGATTTGATCTTGATCAACTATATTTCGAATCATGGGGAAGGTGTTTGGAACTCTTTGGCCAAAGCTGCTGGTCTTAAACGTACTGGAAAGAGTTGCCGGCTTAGGTGGCTAAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACAGCCGAGGAACAACTTTTGATCATGGAGCTTCACGCAAAGTGGGGAAACAGGTGGTCAAAAATTGCCAAGCAACTACCAGGAAGGACTGATAATGAGATAAAAAACTTCTGGAGGACCAGGATCCAGAAGCACATCAAGCAAGCTGATCAGCAACAGAGTAATTCTAATTCTGAGATAAATGATCATCAAGCTAGCACTAGCCAAGTGTCCACCATGGCTGAGCCCATGGAGACCTACTCTTCACCCTGTTACCAAGGAATGTTAGAGCCATTTTCAACTCAGTTACCCAATATTCCTGATCAATCCAGTTGTTGTACCAATGACAACAACAATTATTGGAGCATGGAGGATTTCTGGTCAATGCAGTTACTGAACGGGGATTAA 603 0.4312 MDKKQCNTSQDPEVRKGPWTMEEDLILINYISNHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITAEEQLLIMELHAKWGNRWSKIAKQLPGRTDNEIKNFWRTRIQKHIKQADQQQSNSNSEINDHQASTSQVSTMAEPMETYSSPCYQGMLEPFSTQLPNIPDQSSCCTNDNNNYWSMEDFWSMQLLNGD* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1613 200 Gene3D - 73 144 - -
Pvu8g1613 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pvu8g1613 200 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 197 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pvu8g1613 200 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pvu8g1613 200 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 197 - -
Pvu8g1613 200 MobiDBLite consensus disorder prediction 118 141 - -
Pvu8g1613 200 CDD SANT 73 112 IPR001005 -
Pvu8g1613 200 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Pvu8g1613 200 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pvu8g1613 200 SMART sant 68 116 IPR001005 -
Pvu8g1613 200 SMART sant 15 65 IPR001005 -
Pvu8g1613 200 CDD SANT 18 63 IPR001005 -
Pvu8g1613 200 MobiDBLite consensus disorder prediction 119 141 - -
Pvu8g1613 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pvu8g1613 200 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Pvu8g1613 200 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pvu8g1613 200 Gene3D - 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1613 Pvu-Chr8 36915088 36918669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1613 4 200 MYB Transcription Factor Family AT3G01530 59.500 8.13e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g1613 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1613 K09422 - gmx:778048 377.096