Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1608 ATGGATTGCAGAATAGAAAGTGCAGAAACTCACAGGAATAAGTGTGCAGCATGCTTCAGACAGTTCAACAAACTGGAGCACCTTGTGGAGCACATGAGGATCTCATACCATTCGGTTCATGAGCCAACCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTAAGGGAACATCTTATTGGTCCATTGCCAAAGCAGGAATGCAGAGATATATTTTCCTATAGAGGGTGCAAGTTTTGCTTGAAAGTCTTTGACAGCCCTAATACTCGCAGGATTCACCAAGAAAAATGCCAACACTCTGCAACAAACGCTGGAATAATTGGTCGCTTTTCAAACTTGGGACTTCGTGATAATTTTGCCATTAGTGGTGGAGCAAGAGGACCACAAGTAGTCGCATTAGCATGTAAAATGGTTGGAGGTGGTAGTGATGGCTCACTGGATCTCTGTGGAAGAGTGTGCTTAACCGATGAGCATGAGAACATAATATTCCATTCTTATGTGAAGCCACCAATTCCTGTTACAAACTACAGGTATGAGACAACAGGCATTAGACCAGAATACCTTAGGGATGCAATGCCAATGAGACAAGTTCAAAGGAGGATTCAAGACTTTCTTTGCAACGGTGAACCTATGTGGACAATTCGTGCAAGAGGAGGAAGAGCCAGGATTCTTGTGGGTCATGGTTTGGATCATGACCTTGAATCTTTGCAAATAGAATATCGAACAGAAAAAATAAGGGACACTGCAAAATACCCTCCTCTGATGAAAACGAGCAAGCTCAGCAACTCCCTTAAGTATGACATTCAAGCTGGAATTCAGGATCCTTATGATGACTGTGTTGCAACTATGAGACTCTACATGAGAATGAGATCCCAAGTTCACAGAACACAGGATTACCCTTTGGTTTCTGATCCACAGAACAGAAACAATTTTGCTTCGTGGAGGCAAAGTGAGCTCGAAAGAATGACTCCTGAACAAATGCTGGAAGTATCAAGGTCTGACTACTATTGCTGGTGCATGGATTCCTTGTATAATCCCTGA 1047 0.4298 MDCRIESAETHRNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKQECRDIFSYRGCKFCLKVFDSPNTRRIHQEKCQHSATNAGIIGRFSNLGLRDNFAISGGARGPQVVALACKMVGGGSDGSLDLCGRVCLTDEHENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMPMRQVQRRIQDFLCNGEPMWTIRARGGRARILVGHGLDHDLESLQIEYRTEKIRDTAKYPPLMKTSKLSNSLKYDIQAGIQDPYDDCVATMRLYMRMRSQVHRTQDYPLVSDPQNRNNFASWRQSELERMTPEQMLEVSRSDYYCWCMDSLYNP* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1608 348 CDD REX4_like 133 288 IPR037431 GO:0006364|GO:0008408
Pvu8g1608 348 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Pvu8g1608 348 SUPERFAMILY Ribonuclease H-like 149 293 IPR012337 -
Pvu8g1608 348 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Pvu8g1608 348 Pfam Exonuclease 155 253 IPR013520 -
Pvu8g1608 348 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 6 344 - -
Pvu8g1608 348 SMART exoiiiendus 131 297 IPR013520 -
Pvu8g1608 348 Gene3D - 129 306 IPR036397 GO:0003676
Pvu8g1608 348 PANTHER OS02G0709000 PROTEIN 6 344 - -
Pvu8g1608 348 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Pvu8g1608 348 SMART c2h2final6 77 101 IPR013087 -
Pvu8g1608 348 SMART c2h2final6 42 62 IPR013087 -
Pvu8g1608 348 SMART c2h2final6 13 37 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1608 Pvu-Chr8 35716474 35718538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1608 1 345 C2H2 Transcription Factor Family AT3G27970 71.629 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1608 - - gmx:100813973 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1608 8 35716474 35718538 Pvu8g1608 8 35716474 35718538 ECH