Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1594 ATGGAGTCACCACCCAGTAATCACCACGCCGTCGACGGCGATGCCAACGACCTTATACCCTTCTCCCACCGCGATGACGAAGAAGACAAGCCCCAACCCCTCACCGGCGACGGTGCCAGTCCCGGAAAGATTTTTATAGGCGGTTTAGCGAGAGAAACCACTATTGCACAATTCATCAAGCACTTTGGTAAATACGGTGAGATAACGGATTCCGTTATCATGAAGGACCGGAAGACCGGCCAGCCTCGCGGCTTCGGCTTCATAACTTACGCTGATCCCTCTGTGGTGGACATAGTTATTGAGGATACTCACATTATCAACGGCAAACAGGTGGAGATTAAGCGGACGATACCGAGGGGTGCCGTTGGCTCGAACTCGAAGGACTTCCGAACCAAGAAGATTTTTGTTGGTGGAATTCCTTCTACTGTGAGTGAAGATGAATTTAGAGACTTCTTTACACGCTATGGAGAAGTCAAAGATCACCAGATAATGCGGGATCACTCTACTAATCGTTCACGTGGCTTTGGGTTCATTACCTATGACTCTGAAGAAGCTGTTGATGATCTCTTAGCTGTGGGGAACAAAATTGAGTTTTCTGGAGCTCAGGTGGAAATCAAGAAGGCGGAACCAAAAAAGCCTAATCCACCAGCTCCATCATCCAAGCGCTATAATGATGCCCGGTCTTCATATGGTGGTGGATATGGAGATGCTTATGATGGATTTGGTGGTAATTTTGGTATGGGTGGCGGCTATAGGTCAGGTGGTGCCTATGGTGGTAGGGGAAGTGCTTATGGTGGCTTTGGAAGTGAATTTGGCGGTTATGGAAGATATGCTGGTGCCATGGGGCCTTATAGAGGTGATCCTTCTCTTGGGTATGCTGGTCGATATGGTGGAGGCTTTGGCAGAGGCTATGATCTTGGTGGGTATGGTGGAGCTAATGAGGGTTACGGGGCATATAGTGGTGGTGGTGGTTCCTCTGGTAATGCTTATGGAAGCAGCTATGATGCCAGCCTAGCGGGTGGATATGGGGGGGCTAGTGGAGGCTCCTTTTATGGGACTAGAGGGGGATATGGTGGTGCAGGAACTGCTCGATATCATCCTTATGGAAGATAG 1113 0.4942 MESPPSNHHAVDGDANDLIPFSHRDDEEDKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDIVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVSEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLAVGNKIEFSGAQVEIKKAEPKKPNPPAPSSKRYNDARSSYGGGYGDAYDGFGGNFGMGGGYRSGGAYGGRGSAYGGFGSEFGGYGRYAGAMGPYRGDPSLGYAGRYGGGFGRGYDLGGYGGANEGYGAYSGGGGSSGNAYGSSYDASLAGGYGGASGGSFYGTRGGYGGAGTARYHPYGR* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1594 370 MobiDBLite consensus disorder prediction 18 33 - -
Pvu8g1594 370 SMART rrm1_1 133 206 IPR000504 GO:0003723
Pvu8g1594 370 SMART rrm1_1 43 114 IPR000504 GO:0003723
Pvu8g1594 370 SUPERFAMILY RNA-binding domain, RBD 38 121 IPR035979 GO:0003676
Pvu8g1594 370 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 370 - -
Pvu8g1594 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Pvu8g1594 370 MobiDBLite consensus disorder prediction 1 41 - -
Pvu8g1594 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
Pvu8g1594 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Pvu8g1594 370 SUPERFAMILY RNA-binding domain, RBD 129 240 IPR035979 GO:0003676
Pvu8g1594 370 MobiDBLite consensus disorder prediction 206 226 - -
Pvu8g1594 370 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 370 - -
Pvu8g1594 370 Gene3D - 124 240 IPR012677 -
Pvu8g1594 370 Gene3D - 42 121 IPR012677 -
Pvu8g1594 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1594 Pvu-Chr8 33825637 33829140 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1594 42 207 Eukaryotic Initiation Factors Gene Family AT1G71770 24.868 4.14e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1594 K12741 - gmx:100813165 482.641