Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1580 ATGAATGGTAAGTGGTCCTTTGACCATACCCATTTGAAGATGGCTTGGATTCAGCATCAAATCCAACATAAAGATGGTTACATGAGCTATCCACCACCGGTTTTGCCTCCCCCTTCACCCCCAATTTGGGGTGCATTCCACAAAGAATCAATGTCTTCTTCATCATCATCATCTCCCTCACCACATTCACCTTCATCCTCTGGTGCTAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGATTCTGGCTGTTCTATTTTTCATCTCTGGCCTGCTCCACCTGCTTGTTAGATTTCTCATAAAGAACCCTTCTTCCTCAGCATCTTCCGAATCCAATAGGAACCAGGAAAATGCAACCTCTGATGCTCTTCAAAGGCAGTTGCAACAACTTTTCCATCTACATGATTCTGGTCTGGACCAGGCTTTTATTGATGGACTTCCTGTTTTCCAATACAAGGAGATAAAGGGGTTGAAGGAGCCATTTGACTGTGCTGTTTGTCTCTGTGAGTTTTCTGAAAAGGATAAGCTCAGGTTGCTCCCTATGTGCAGCCATGCCTTCCATATAAGCTGTATAGACACCTGGCTTTTGTCCAACTCCTCATGCCCTCTTTGTAGGGGAACCCTCCTTACTCCTGGCTTTTCCCTTGAAAATCAAGTGTTTGATTTTGATGATTTGAGAGATGATGGGGGTTGGCCCTGCAATGGGGAAAATGAGTTCACAACCAGGCAGAAAACGGTTGAAATTGAAGAAACTGTGGTAGAGAAGGGGGTTTTCCCCGTGAGAATTGGAAAATTCAGAAGGCTTGATGTGGAGGCAGAGGAGGCTGCAGGAGGAGAGACTAGTAGCAATAATTTGGATGCCAGAAGATGTTACTCCATGGGATCTTATCAATACGTGCTTGGCAAGTCAGACCTCAGGGTAACCTTGAGCCATGATCCACAAGGTGTTGTACAATTCGTGAAAGGAACAGAAAACTTAGAGAGATTTTCAGTTGAGGGGGATATTGAAGGAAAGAAGATTACAAGTGTCTGTAAAGGTGAGAGTTATTCTGTTTCCAAAATCTGGCAGTGGTCAAAGAAGGGAAAATTTTCAGTTTCTTCTGATACCCATATGGGTATGCCATCTTCTCTTAACACCGATTTGCCTTGGATGAGAGAAACAGGAAGGACATGA 1173 0.4382 MNGKWSFDHTHLKMAWIQHQIQHKDGYMSYPPPVLPPPSPPIWGAFHKESMSSSSSSSPSPHSPSSSGARISPAVLFIIVILAVLFFISGLLHLLVRFLIKNPSSSASSESNRNQENATSDALQRQLQQLFHLHDSGLDQAFIDGLPVFQYKEIKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSSCPLCRGTLLTPGFSLENQVFDFDDLRDDGGWPCNGENEFTTRQKTVEIEETVVEKGVFPVRIGKFRRLDVEAEEAAGGETSSNNLDARRCYSMGSYQYVLGKSDLRVTLSHDPQGVVQFVKGTENLERFSVEGDIEGKKITSVCKGESYSVSKIWQWSKKGKFSVSSDTHMGMPSSLNTDLPWMRETGRT* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1580 390 SUPERFAMILY RING/U-box 142 211 - -
Pvu8g1580 390 MobiDBLite consensus disorder prediction 48 65 - -
Pvu8g1580 390 CDD RING-H2_PA-TM-RING 162 205 - -
Pvu8g1580 390 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 14 373 - -
Pvu8g1580 390 SMART ring_2 163 204 IPR001841 -
Pvu8g1580 390 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Pvu8g1580 390 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 14 373 - -
Pvu8g1580 390 Pfam Ring finger domain 162 205 IPR001841 -
Pvu8g1580 390 MobiDBLite consensus disorder prediction 46 65 - -
Pvu8g1580 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 210 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1580 Pvu-Chr8 33326836 33329392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1580 63 362 C3H Transcription Factor Family AT2G18650 43.072 3.83e-58 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1580 - - qsu:112013252 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1580 8 33326836 33329392 Pvu8g1580 8 33326836 33329392 ECH
Pvu3g2049 3 41143005 41144414 Pvu8g1580 8 33326836 33329392 ECH