Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1554 ATGTCACTCATTACCTGCTTCTTTGTCCTGCAATGGTTAACATGGTCAAGGGTGCTTCTGGCTCATGGAAGAAGTCATTGCTCAAGGTCCATTATGAGCATAGGTGCTGTGCTTGATTTGAGTTCACAAATTGGAAAACATCAGAAGATAGCCATGGAAATTGCAGTCCAAGACTTCAATCGGTTCAGTTGTTCTAAGCTGCTTTTGAAGATAAAAAATTCCAATGGGAGTTCAGCTCAAGCAGTTGCTAGTGCCAGATCAGAGCAAGTATCACCTCTATTGCCGTACTTCATCCAAGTGGGATATAATATCAACCTTCACATGCAATGCATTGCAGCCATTGTAGGAGAATATAGATGGAGAAAGGTGACAGCAATCTATGAATTTGATGACAGATTTTCTTCTGATCCAGGGATGCTACTCAACCTCTCCTATTCTCTTAGACTTGTTGGTTCTGAGATTGTCAATCATGTACCTTTTCGTTCCTTGTCCTCTCTATTAGACCCAAATTCTACCATTGAAAATGAGTTTAATAGTCTAAAAAGCAAGAGTAACAGGGTCTTCTTGATTCTGCAATCTTCTATAGAGCTCGCTAACCTACTTTTTGAGAAAGCAAACCAAATGGGTTTAATGGGAAAGGGTTCTGTGTGGATCATCCCAGATGGGATTGCAGGTAATCTTGATTCAGTTAACCCGTCTGCTATCCTTAACATGCAAGGAGTTATTGGATTTAAGACACACTTCTTGGAAACAAGCAAGGAATTTAGAAGGTTTAAATTCAAATTTCGTAGAAGGTTTGTGTTGGAGTTCCCGGAAGAAGAGAACATTAACCCAAGTTCCTTTGCACTTCAATCGTATAAAACAACCTGGGAAGTTGCTCAAGCTGCAAGAGAATCACAAGGGAAGTTAACCCTTAAACAATTATTAAAAAGTAATATCTCCAGGACTGAGAAATTACGGCAATCATCGACCCTCAAAATAATTAACGTGATAGGTAAAAGTTACAGAGAGTTGGCATCATGGTCTCCAGCATTAGGTTTCTCCAAAAGCCTTGTTACAGAACAGCTGACAGAGATGAACACAAACAGTGGTTCAAGTGGAGTTTTGAGTAAAGTTTATTGGCCTGGAGGTATACAATTTGTTCCTAAGGGATGGACTCAAAGCACCAAAGGGAGGAAACTGAAAATAGGAGTGCCTGCAGAAGGTGCATTTACTGATTTCGTGAATGTGGAATATGATATCATCAGGAATATAACTTCTATTACCGGATTCTCAATTGATGTCTTTAAAGCAGCTGTTCATAATTTAGCTTATGATTTGAATTTCGATTTTGTTCCCTTCAATGGATCTTATGATGAAATGGTAGATCAAGTCTACAATAAGACATTGGATGCTGCAGTCGGAGATACATCAATAATGGCATATAGATATCATTTAGTTGACTTCTCACAACCGTATGTTGAATCTGGTATTGACATGGTGGTTACAGAGCAGCCAGCTAAATTGAAGGAAACATGGATTTTTTTAGAAGCCTTCACAAAAGACATGTGGATAATGATGGCAGCATTGCACATTTTTGTGGGATTCGTCATATGGTTGATCGAAAGGCAAGTTAATGCAGAACTAAAAGGATTGGGGTCCATGCTTTGGTTCTTAGTCACTGTAATATTCTATGCACACAGGAATAATGAGAAGTTCTCCAGTTTTCTGTATCCTCTACAATCTTCTTTGAAGTTGCGAGTGAGTGTTGGTAGGTTGGGTGTGTGTGGTTCGAGTGGGCAGAGTGAGGTGTTCAGTCCAATAGAACCCATGAGGGTATTATACCAACAAATAATTGGGTGCTTACCGTTGTGTGTGAGAGGCCACCGAAGGAGTATGTCGGTGCTGGATTGGCACAGTGTGGTGTGTGCAGAGCGAGAGAGATAA 1926 0.4008 MSLITCFFVLQWLTWSRVLLAHGRSHCSRSIMSIGAVLDLSSQIGKHQKIAMEIAVQDFNRFSCSKLLLKIKNSNGSSAQAVASARSEQVSPLLPYFIQVGYNINLHMQCIAAIVGEYRWRKVTAIYEFDDRFSSDPGMLLNLSYSLRLVGSEIVNHVPFRSLSSLLDPNSTIENEFNSLKSKSNRVFLILQSSIELANLLFEKANQMGLMGKGSVWIIPDGIAGNLDSVNPSAILNMQGVIGFKTHFLETSKEFRRFKFKFRRRFVLEFPEEENINPSSFALQSYKTTWEVAQAARESQGKLTLKQLLKSNISRTEKLRQSSTLKIINVIGKSYRELASWSPALGFSKSLVTEQLTEMNTNSGSSGVLSKVYWPGGIQFVPKGWTQSTKGRKLKIGVPAEGAFTDFVNVEYDIIRNITSITGFSIDVFKAAVHNLAYDLNFDFVPFNGSYDEMVDQVYNKTLDAAVGDTSIMAYRYHLVDFSQPYVESGIDMVVTEQPAKLKETWIFLEAFTKDMWIMMAALHIFVGFVIWLIERQVNAELKGLGSMLWFLVTVIFYAHRNNEKFSSFLYPLQSSLKLRVSVGRLGVCGSSGQSEVFSPIEPMRVLYQQIIGCLPLCVRGHRRSMSVLDWHSVVCAERER* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1554 641 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 564 - -
Pvu8g1554 641 Gene3D - 281 397 - -
Pvu8g1554 641 PANTHER GLUTAMATE RECEPTOR 29 564 - -
Pvu8g1554 641 SUPERFAMILY Periplasmic binding protein-like II 371 522 - -
Pvu8g1554 641 SMART GluR_14 393 593 IPR001320 GO:0015276|GO:0016020
Pvu8g1554 641 Pfam Receptor family ligand binding region 94 309 IPR001828 -
Pvu8g1554 641 Pfam Bacterial extracellular solute-binding proteins, family 3 420 501 IPR001638 -
Pvu8g1554 641 Gene3D - 404 506 - -
Pvu8g1554 641 Gene3D - 507 584 - -
Pvu8g1554 641 Gene3D - 104 280 - -
Pvu8g1554 641 SUPERFAMILY Periplasmic binding protein-like I 28 385 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1554 Pvu-Chr8 31345021 31351835 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1554 91 561 Ion Channels AT5G11210 31.939 1.54e-76 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1554 - - pvu:PHAVU_008G150400g 1261.9