Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1532 ATGGAGAACAGAAGAATGGCAGTCAACGGAGAACAGAAACTTAGCCCCAGAAACCAAAAGATCCCATTAGCAGATTCCAATGTCCAAAACATGGCGACCCTTTTAACCCCAAGGTTCAAATCTGCAGCTGCTATGGCTGGTTGGGATGAAGAGACACTGTTATTGGCCAGCCTCATCGTTGAGGACACACCAGATAGAGATTCCAAGCACAAGAGACGCTCTCTTTTGAATTCCAAATCTCCATCCACCAACTCTTCAAGGAAACGTAGAGCTCGGAGGACTTCACAAAAACCAATCCCTGTAATTCTTGATCTTAATGCAGAAGAAACTCCCGTAAAAGATAGTGGGAGAAAGAAGAAAGAAGAAAGGGTTTGTGTTGATAATGAGGGAAGCAAAGTAGGAGGAGGGGATGGGGATGAGTCGAAAGAGAAGACTCGGAGCGCTCCTTCTTCTAGTTCTGCTCTACCCTTCATTGATAAACTTAGGGACGAGCTTTCCTGTGCTATTTGTTTGGAAATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAGAAAATGTCTACGATCTGCTGCAGACAAGTGTGGCAAAAAGTGCCCCAAATGCAGGCAATTAATAAGCAATGGACGATCATGTAGTGTGAACACTGTCCTCTGGAACACAATTCAGCTTCTGTTTCCCCAAGAAATTGAGGCAAGAAAAGCAGCTGGCTCCTTGAATGGTCGCCAACAAGCTCAAAATCTGAGTCCAGAAACAGCATTCTATGCTAACCTAAGGAGTACAAGCATACAACCTTCTGGTGGGGCATCAAGCAGAAACATGAATTCAAGGAGGAGTGTGGCAATAACATCAACACAGGAGGATGAGGATGCTGCATTGGCTAGAAGGTTACAGAGAGAAATAGATGAACAAAGCCCGGGAACAAGTCGAAGTCGACCAAGAATGAGGACAAGAAGAGGGGTTTCTACTAGCCAACATGAGGATGCAGCTTTGGCTCTGAGGTTGCAGAGAGAAGAGTTCATCCAAACTTTTAGAGGGGGCAGCCAGGAACAGACTATTAGGCTACCTTCATCAACATTTGCTAGAGCAAATTTGAGGGCTATGGCATCTAGAGCCGTCAATCTTAGGACTAATGACAGAAGAAGATAA 1158 0.4508 MENRRMAVNGEQKLSPRNQKIPLADSNVQNMATLLTPRFKSAAAMAGWDEETLLLASLIVEDTPDRDSKHKRRSLLNSKSPSTNSSRKRRARRTSQKPIPVILDLNAEETPVKDSGRKKKEERVCVDNEGSKVGGGDGDESKEKTRSAPSSSSALPFIDKLRDELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCSVNTVLWNTIQLLFPQEIEARKAAGSLNGRQQAQNLSPETAFYANLRSTSIQPSGGASSRNMNSRRSVAITSTQEDEDAALARRLQREIDEQSPGTSRSRPRMRTRRGVSTSQHEDAALALRLQREEFIQTFRGGSQEQTIRLPSSTFARANLRAMASRAVNLRTNDRRR* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1532 385 ProSiteProfiles Zinc finger RING-type profile. 167 206 IPR001841 -
Pvu8g1532 385 MobiDBLite consensus disorder prediction 1 20 - -
Pvu8g1532 385 Pfam Zinc finger, C3HC4 type (RING finger) 167 205 IPR018957 GO:0046872
Pvu8g1532 385 SMART ring_2 167 205 IPR001841 -
Pvu8g1532 385 MobiDBLite consensus disorder prediction 300 329 - -
Pvu8g1532 385 SUPERFAMILY RING/U-box 158 230 - -
Pvu8g1532 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 236 IPR013083 -
Pvu8g1532 385 PANTHER UNCHARACTERIZED 317 378 - -
Pvu8g1532 385 PANTHER UNCHARACTERIZED 26 250 - -
Pvu8g1532 385 ProSitePatterns Zinc finger RING-type signature. 182 191 IPR017907 -
Pvu8g1532 385 MobiDBLite consensus disorder prediction 110 146 - -
Pvu8g1532 385 PANTHER - 317 378 - -
Pvu8g1532 385 PANTHER - 26 250 - -
Pvu8g1532 385 MobiDBLite consensus disorder prediction 64 153 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1532 145 221 RAD5 or RAD16-like Gene Family AT5G43530 36.145 3.20e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1532 - - gmx:102666585 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1532 8 30128271 30130400 Pvu8g1532 8 30128271 30130400 ECH