Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1523 ATGTGCAACAAGAACAGTCCTTCTTCTCCAGACATTCAAACAACCTCTATCATGAAGAGGACACGGAGACCAACCAAACGTTATCACTCTTCCTCCTCCTCCTCCTCCTCTTCTTCGTCGCTTAAGCCGCACAGGCGCGGAAACCGGACCAAGACGAGGAGGCCCAAGTTCGTTAGCCTGCGTCTTCAGCTATCCGAGCCCAACAACATAGCTGCTCAGCCCAAGCCCAAGTCCAAGGCCCTACAGCAGCCGCAGCTGAACCTCTTCCCTCTGCATCCGGAGCACCATGACATGCACGAGGAGCAGAACGTGGCGCTGCTCTTCAGCGCGGAGGGCGGGGCAACGCTGACAGGGCTTCTAGAGGAGGATTCGATGTCGCCGTCGTCGGCGACTACAGAGGGGTCGCTGTCGGCGCTGACTTGTCCGACGGAGGACGCGGGGAATTGGCTAGTGAGGAAGGCGATGCGGCGTAGGGAGAGCGAGGAGGGGAGCGAGGAAAGGTGGGTGTGCTATTCGGAGGTGGTGGAGGAGAAGAAGGAGGCGATGGAGGAGGTGACGAGTTATTGCATGATGGGGACAACGACGACCACAACGTCCTTTGGGTTGTTGTCTTTGAAGCTGGATCACCAGGGGATATTGAATGCTTGGTCTGATAAAGGCTCGCTATACGTTGCGGGGGAGGGAGGCCCACACACTGTCCCAGACTTCCTCAATGGTTTCCTCCTTCATAATGCCTTCCTCCACCATGTTGCATGGGATGGCTGGGGGAATGGTGTGGTTGGGAACGCATGGGGTGTTCCTGAAGATTGTGGGGCAAACAAGACGAATGTGAAGGAGGAAAATGGTTGGAAGTTGGGGCAGAGAGAAGCAAGTGTGCAGAGATACAAGGAGAAGAGGCAAAGCAGGCTCTTCTCTAAGAAGATCCGTTATGAAGTTCGCAAGCTGAATGCTGAGAAACGGCCCAGGATGAAGGGTCGATTTGTGAAGCGGGAATGA 996 0.5552 MCNKNSPSSPDIQTTSIMKRTRRPTKRYHSSSSSSSSSSSLKPHRRGNRTKTRRPKFVSLRLQLSEPNNIAAQPKPKSKALQQPQLNLFPLHPEHHDMHEEQNVALLFSAEGGATLTGLLEEDSMSPSSATTEGSLSALTCPTEDAGNWLVRKAMRRRESEEGSEERWVCYSEVVEEKKEAMEEVTSYCMMGTTTTTTSFGLLSLKLDHQGILNAWSDKGSLYVAGEGGPHTVPDFLNGFLLHNAFLHHVAWDGWGNGVVGNAWGVPEDCGANKTNVKEENGWKLGQREASVQRYKEKRQSRLFSKKIRYEVRKLNAEKRPRMKGRFVKRE* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1523 331 ProSiteProfiles CCT domain profile. 288 330 IPR010402 GO:0005515
Pvu8g1523 331 MobiDBLite consensus disorder prediction 28 43 - -
Pvu8g1523 331 MobiDBLite consensus disorder prediction 1 19 - -
Pvu8g1523 331 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 37 331 - -
Pvu8g1523 331 MobiDBLite consensus disorder prediction 1 80 - -
Pvu8g1523 331 Pfam CCT motif 288 330 IPR010402 GO:0005515
Pvu8g1523 331 MobiDBLite consensus disorder prediction 62 80 - -
Pvu8g1523 331 PANTHER CCT MOTIF FAMILY PROTEIN 37 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1523 Pvu-Chr8 29619090 29624547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1523 203 330 C2C2-CO-like Transcription Factor Family AT1G73870 44.531 5.01e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu8g1523 CCT 1.1e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1523 - - gmx:100798231 479.559