Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1517 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAAGAAGATCATAAGCTCATGAATTTTATTCTCAACAATGGCATCCATTGCTGGAGAAGGGTTCCTAAACTAGCAGGTCTTCTAAGATGTGGAAAGAGTTGCAGACTCAGATGGATTAATTATCTGAGGCCAGACCTTAAGAGAGGTGGCTTCACAGAAATGGAAGAGGTTCAAATTATACAACTACATTCACGTCTTGGTTATAGATGGTCTAAGATTGCTTCACATTTTCCTGGGAGGACAGACAACGAAATCAAGAACCATTGGAACACAAGAATCAAGAAAAAGTTCAAACTCCTTGGTCTGGACCCCGTGACCCAGAAGCCGCCAATTGAGCCAAAGGAGAGTACCGATGAGGGCAGGAATAATACCGATTATCCTCATACTTGTATTTCTGGAGGGTGTCTGCAAAATGTGGAGATTAAATCCATGGAGAGTGATGGCAGCAGAGAAATGACGAAAACAGAAGGGGAAAGAGAAGAAAAGAAGGTGACATGGGATGAGACCACTGAGCTTTTAAACAATTTTGAAATGCTATGCTCACCGTTGGAGTTGGGATCATGGGTGAGTCAAGGAACCAATACTAGTACTAATTCTTTGTGTAGTTCATCTGTCTCTCTGGATGATGAATCCTCTTACGTACTGGAAAACTCCTTAGAGCAATGGGTTGATAGTATGAATTCCATTCTCTCCTGGGATGGTTTCAATCCTTTTGATCAAGACATTTTCTTCTCGGAAAATGGGGAATAA 807 0.4164 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRRVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEVQIIQLHSRLGYRWSKIASHFPGRTDNEIKNHWNTRIKKKFKLLGLDPVTQKPPIEPKESTDEGRNNTDYPHTCISGGCLQNVEIKSMESDGSREMTKTEGEREEKKVTWDETTELLNNFEMLCSPLELGSWVSQGTNTSTNSLCSSSVSLDDESSYVLENSLEQWVDSMNSILSWDGFNPFDQDIFFSENGE* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1517 268 MobiDBLite consensus disorder prediction 123 143 - -
Pvu8g1517 268 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu8g1517 268 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 238 - -
Pvu8g1517 268 CDD SANT 16 61 IPR001005 -
Pvu8g1517 268 SMART sant 13 63 IPR001005 -
Pvu8g1517 268 SMART sant 66 114 IPR001005 -
Pvu8g1517 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu8g1517 268 CDD SANT 70 110 IPR001005 -
Pvu8g1517 268 Gene3D - 69 143 - -
Pvu8g1517 268 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu8g1517 268 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu8g1517 268 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu8g1517 268 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pvu8g1517 268 MobiDBLite consensus disorder prediction 164 184 - -
Pvu8g1517 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu8g1517 268 Gene3D - 11 67 - -
Pvu8g1517 268 PANTHER MYB DOMAIN PROTEIN 40 2 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1517 Pvu-Chr8 28700542 28701597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1517 1 147 MYB Transcription Factor Family AT5G16600 70.946 1.47e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g1517 Myb_DNA-binding 6.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1517 K09422 - gmx:100783231 421.779