Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1494 ATGTTATTACCAAAAAAGGAAGTACCGGGATGTGCTTTAGTGAAGATCATGGCCTCTTCTAGTTACTCTAACTCTCCCTGTGCTGCCTGCAAGTTTTTGAGAAGGAAATGCATGCCAGATTGCATTTTTGCTCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCCAGCAACGTGAGTAAACTCCTGAATGAAGTCCAACCCCATCAAAGGGAGGATGCAGTGAATTCTCTGGCCTATGAAGCTGAAGCACGGATAAAAGATCCAGTTTATGGTTGTGTTGGAGCAATTTCAGTACTCCAAAGACAAGTAATTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATACCTGCAATGAAATTCCCACTCAAGATGGGAGAAGAATGGGTGAAGGGGGAGGTTCCTCTCTAGGTCAATCTCCTGGTTATTACTACCCTTCTCCTTGGAACAATGATCCACTTGGGGATGGTTATCACAGAGGTGACAATAATATGTGA 537 0.4358 MLLPKKEVPGCALVKIMASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEIPTQDGRRMGEGGGSSLGQSPGYYYPSPWNNDPLGDGYHRGDNNM* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1494 178 ProSiteProfiles LOB domain profile. 25 126 IPR004883 -
Pvu8g1494 178 Pfam Lateral organ boundaries (LOB) domain 26 122 IPR004883 -
Pvu8g1494 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 17 166 - -
Pvu8g1494 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 166 - -
Pvu8g1494 178 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1494 Pvu-Chr8 27548048 27550161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1494 14 129 AS2 family AT3G27650 81.897 1.81e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu8g1494 LOB 1.1e-42 No_clan