Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1490 ATGATATTAAACAACGCAAACAAGCACCAAAAACACACTTCCTCCATCTTCAATTCTTCCCCAAAAATGAGCCAGTGTGTTCCCAGCTGGGATCTCGACGACAACCCACCATCCCCAAGACTCTCTCTTCGCTCCAACTCCAACTCCAACTCCAATTCCACTGCCCCTGATGTCCCCATGTTAGACTACGAGGTTGCGGAGCTGACATGGGAAAATGGGCAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTGAAGCCCCCCACAAGCGCCGCCAATAAGTACACATGGGAGAAGCCACGCGCCAGTGGCACCTTGGAGTCCATAGTGAACCAAGCCACGAGCTTGCCGCACAGTGGAAAGCCAACGCTGAACGGCGACGGCGGCGTGTACGGGAACTACCTGGTCCCGTGGTTAGACCCTCACGGGAGCGCCGGGACGGCGAACACGGTGACGATGGACGCATTGGTGCCGTGTTCGAAGCGGGAGCAGAGCAAGCAGGGCATGAAGTCCGTCCCCAGCACATGCATGGTAGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCAACCACGGGGCGAAGGGACAGGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGTGCCACCTTCGGAAGGGATAGCAAGCACGTGACCCTTGACACGTGCGACAGGGAGTTTGGTGTCGCTTTCACTTCCTCCTCTATCAACTCCCTCGATAACACCAGCTCGGCTAAGCACTGCACCAACACCACCACCGTCGACGACCACGATTCTGTTTCCCACAGTAAACCAGTGGGTGAAAACGGGGACGAGGAGAAGAAACAGAGAGCAAAAGGAAAATCGTCGGTGTCTACTAAAAGGAGTAGAGCTGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATTAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATTTGAAGCAGTTGCAAGCACAGGTGCAGATGATGAATAGAATCAATATGTCATCGATGATGCTGCCATTGACCATGCAACAGCAGCTTCAGATGTCTATGATGTCTCCAATGGGCATGGGATTGGGGATGGGAATGGGGATGGGGATGGGAATGGGGTTGGACATGAACTCCATGAATCGTGCTAACATCCCTGCCATCCCTCCAGTCCTTCACCCTTCTGCCTTCATGCCGATGGCAGCGTCGTGGGATGCCGCGGCGGCCGGAGCTGCTGACCGATTTCAAGGGAATCCGGCCACCGTGATGCCTGACCCTCTGTCCACACTTTTCGGATGCCAATCACAGCCCATGACCATGGATGCCTACAGTAGACTTGTTGCGATGTATCAGCAGCTGCACCAACCTCCAGTTTCTGGTTCCAAGAACTGA 1437 0.5386 MILNNANKHQKHTSSIFNSSPKMSQCVPSWDLDDNPPSPRLSLRSNSNSNSNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKPPTSAANKYTWEKPRASGTLESIVNQATSLPHSGKPTLNGDGGVYGNYLVPWLDPHGSAGTANTVTMDALVPCSKREQSKQGMKSVPSTCMVGCSTRVGSCCGNHGAKGQEMSGRDQSVSGSATFGRDSKHVTLDTCDREFGVAFTSSSINSLDNTSSAKHCTNTTTVDDHDSVSHSKPVGENGDEEKKQRAKGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGLDMNSMNRANIPAIPPVLHPSAFMPMAASWDAAAAGAADRFQGNPATVMPDPLSTLFGCQSQPMTMDAYSRLVAMYQQLHQPPVSGSKN* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1490 478 MobiDBLite consensus disorder prediction 39 57 - -
Pvu8g1490 478 Pfam Helix-loop-helix DNA-binding domain 297 342 IPR011598 GO:0046983
Pvu8g1490 478 MobiDBLite consensus disorder prediction 1 57 - -
Pvu8g1490 478 CDD bHLH_AtPIF_like 292 353 - -
Pvu8g1490 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 341 IPR011598 GO:0046983
Pvu8g1490 478 Coils Coil 298 318 - -
Pvu8g1490 478 MobiDBLite consensus disorder prediction 252 306 - -
Pvu8g1490 478 Gene3D - 287 353 IPR036638 GO:0046983
Pvu8g1490 478 MobiDBLite consensus disorder prediction 199 215 - -
Pvu8g1490 478 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 23 478 IPR031066 -
Pvu8g1490 478 MobiDBLite consensus disorder prediction 1 26 - -
Pvu8g1490 478 MobiDBLite consensus disorder prediction 253 282 - -
Pvu8g1490 478 SMART finulus 298 347 IPR011598 GO:0046983
Pvu8g1490 478 PANTHER TRANSCRIPTION FACTOR UNE10 23 478 - -
Pvu8g1490 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 354 IPR036638 GO:0046983
Pvu8g1490 478 MobiDBLite consensus disorder prediction 195 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1490 Pvu-Chr8 26710248 26715678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1490 23 462 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 51.225 5.70e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu8g1490 HLH 7.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1490 - - vra:106780284 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1490 8 26710248 26715678 Pvu8g1490 8 26710248 26715678 ECH
Pvu8g1490 8 26710248 26715678 Pvu10g0733 10 18650913 18655909 PCT