Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1488 ATGGCTCTTACACTTCAACGTGCTTTATTTGATCTACTTACCCTTGTAGCTATACTCTCAGTATTCCTAGTAGTCCCTTCCTCTTGTTTCAACCCCAAAAAGCTCCTTAACGCTTCATATTATTCTCCATCTGGTTCAGATTGGTCACCTGCAGTGGCCACTTGGTATGGACCTTCTAATGGAGATGGAAGTGAAGGTGGAGCTTGTGGATACGGCAACGCTGTTGGGCAACCTCCATTCTCTTCATTAATATCTGCAGGAAGCCCTCTGTTATATGACTCCGGCAAAGGGTGTGGTTCTTGTTATGAGGTGAAATGCACAGGGAATTCTGCATGCTCAGGCAATCCCGTGAAAGTAGTGATCACTGATGAGTGTGCTGGGTGTGGCTCAGATGCTCAATATCATTTTGATTTGAGTGGCAGTTCTTTTGGAGCAATGGCAGATTCAGGTCAGGATGAGAATCTACGCAATGCAGGAAAAATAAACATTCAACATAGAAGAATTGAATGCAACTATGGTAGGTCAATAGCTTTTCACGTGGACTCTGGCTCAAACCAAGAATATTTTGCTGCCTTGGTTGAATTTGAGGATGGGGATGGTGACCTTGCCAAGGTTGAACTCAAGGAAGCACATGATGATTCAAATTCATGGGATTCAATGCAACAATCATGGGGTGCAGTTTGGAAACTTGACAAAGGCTCACCACTGAAGGCACCTTTCTCTATCAGGCTAACCACACTTGAGTCTGGCAAGACCATTGTGGCCAGTAATGTGATCCCTGCAGAATGGACTCCTGGTCAGACATATAGATCAATTGTGAATTTTTGA 828 0.4408 MALTLQRALFDLLTLVAILSVFLVVPSSCFNPKKLLNASYYSPSGSDWSPAVATWYGPSNGDGSEGGACGYGNAVGQPPFSSLISAGSPLLYDSGKGCGSCYEVKCTGNSACSGNPVKVVITDECAGCGSDAQYHFDLSGSSFGAMADSGQDENLRNAGKINIQHRRIECNYGRSIAFHVDSGSNQEYFAALVEFEDGDGDLAKVELKEAHDDSNSWDSMQQSWGAVWKLDKGSPLKAPFSIRLTTLESGKTIVASNVIPAEWTPGQTYRSIVNF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1488 275 SUPERFAMILY Barwin-like endoglucanases 38 172 IPR036908 -
Pvu8g1488 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 175 IPR007112 -
Pvu8g1488 275 Gene3D - 172 275 IPR036749 -
Pvu8g1488 275 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Pvu8g1488 275 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Pvu8g1488 275 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Pvu8g1488 275 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576|GO:0019953
Pvu8g1488 275 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576|GO:0019953
Pvu8g1488 275 PRINTS Major pollen allergen Lol pI signature 226 243 IPR005795 GO:0005576|GO:0019953
Pvu8g1488 275 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Pvu8g1488 275 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Pvu8g1488 275 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Pvu8g1488 275 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Pvu8g1488 275 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Pvu8g1488 275 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
Pvu8g1488 275 Pfam Expansin C-terminal domain 176 260 IPR007117 -
Pvu8g1488 275 PANTHER EXPANSIN-B3 10 275 - -
Pvu8g1488 275 SMART dpbb_1 84 165 IPR007112 -
Pvu8g1488 275 SUPERFAMILY PHL pollen allergen 174 271 IPR036749 -
Pvu8g1488 275 Gene3D - 34 171 IPR036908 -
Pvu8g1488 275 Pfam Lytic transglycolase 85 164 IPR009009 -
Pvu8g1488 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 271 IPR007117 -
Pvu8g1488 275 PANTHER EXPANSIN-B2-RELATED 10 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1488 Pvu-Chr8 26359093 26361048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1488 27 275 Expansin Gene Family AT1G65680 62.000 3.68e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1488 - - gmx:548090 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1488 8 26359093 26361048 Pvu8g1488 8 26359093 26361048 ECH
Pvu8g1488 8 26359093 26361048 Pvu10g0737 10 18908355 18909579 PCT